PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000426m
Common NameEUTSA_v10000426mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 299aa    MW: 33506.5 Da    PI: 8.3297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000426mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12119166355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  Thhalv10000426m 119 QDHILAERKRREKLSQRFVALSALIPGL-----KKMDKASVLGDAIKHIKNLQ 166
                      56999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.618116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10120166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-17120185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.72E-13121170No hitNo description
SMARTSM003531.2E-14122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNSLVGDVPQ SLSSLDDITS CYNFDSSCND DLIEKKPAKI VKTTHISPKL HHFPSSNPLP  60
PKLQPSSRIL SFEKMGFKNM NQNSPNLIFS AKEEAGSPEL ITRETKRAQP LTRSPSNSQD  120
HILAERKRRE KLSQRFVALS ALIPGLKKMD KASVLGDAIK HIKNLQESVK EFEEQKKERT  180
MESMVLVKKS QFVLNDYDQP PSSSSDGNHE FSSLNLPEME VRVSGKEVLI KMLCDKQKGH  240
VIKIMDEIEK LDLSITNSIV LPFGPTFDIT IIAQKNNDFD MKIEDVTKSL SCGLSKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13120176864Transcription factor MYC2
5gnj_B2e-13120176864Transcription factor MYC2
5gnj_E2e-13120176864Transcription factor MYC2
5gnj_F2e-13120176864Transcription factor MYC2
5gnj_G2e-13120176864Transcription factor MYC2
5gnj_I2e-13120176864Transcription factor MYC2
5gnj_M2e-13120176864Transcription factor MYC2
5gnj_N2e-13120176864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129ERKRRE
2125130RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000426m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404738.20.0transcription factor bHLH18
SwissprotQ1PF171e-138BH018_ARATH; Transcription factor bHLH18
TrEMBLV4NIV10.0V4NIV1_EUTSA; Uncharacterized protein
STRINGXP_006404738.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-141bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]