PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000438m
Common NameEUTSA_v10000438mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 297aa    MW: 31956.5 Da    PI: 8.2233
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000438mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.4e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
  Thhalv10000438m 13 KGPWSPEEDDLLQTLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding52.61e-1667109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Thhalv10000438m  67 AFSAEEDDTILRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.492863IPR017930Myb domain
SuperFamilySSF466891.65E-3110106IPR009057Homeodomain-like
SMARTSM007172.8E-171261IPR001005SANT/Myb domain
PfamPF002492.5E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-261466IPR009057Homeodomain-like
CDDcd001671.60E-161557No hitNo description
SMARTSM007175.0E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129419.83965114IPR017930Myb domain
PfamPF002492.0E-1467109IPR001005SANT/Myb domain
CDDcd001672.78E-1167110No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2267113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSGSTRKETD RIKGPWSPEE DDLLQTLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRAFSA EEDDTILRAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGGWTS  120
DEGQSCDFGG NGGYDGNLTD EQPLKRTASG GGGAVSTGLF MSPGSPSGSD VSEQSSGPNL  180
PSSSHVFKPT ARAGGVVIES TAKDPATSLS LSLPWSQQRD TVELFPVRKE EEKERGISGF  240
SGDFMTVVQE MIKTEVRSYM ADLQRGSGGG GSSCMVQGAN GRNVGFREFI GIGKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-40121143105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-40121143105C-Myb DNA-Binding Domain
1msf_C2e-40121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00632PBMTransfer from PK28565.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000438m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0880071e-117AY088007.1 Arabidopsis thaliana clone 40307 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404809.10.0transcription factor MYB73
SwissprotO231601e-148MYB73_ARATH; Transcription factor MYB73
TrEMBLV4LUU20.0V4LUU2_EUTSA; Uncharacterized protein
STRINGXP_006404809.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-148myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]