PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000489m
Common NameEUTSA_v10000489mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 125aa    MW: 13995.1 Da    PI: 4.8607
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000489mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26079.36.5e-255961101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +C+aCkvl+  C+ +Cv+apy+p+++p+kf  vh++FG+          ++ +re a+++l yeAe r++dPv G+vg+ l++++ l++lk+++
  Thhalv10000489m   5 PCSACKVLKSVCTGECVFAPYYPSTEPEKFVRVHRIFGT---------FSPLQREYAVKALSYEAEDRIQDPVTGCVGMSLAYEKILNNLKTQI 89 
                      7*************************************7.........577899**************************************** PP

           DUF260  95 allkeel 101
                      +++k+e+
  Thhalv10000489m  90 VSAKNEI 96 
                      *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.247496IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-22593IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MASNPCSACK VLKSVCTGEC VFAPYYPSTE PEKFVRVHRI FGTFSPLQRE YAVKALSYEA  60
EDRIQDPVTG CVGMSLAYEK ILNNLKTQIV SAKNEIVATM GSDKVPEYND IPMPEDFLMT  120
QNQQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-252978112LOB family transfactor Ramosa2.1
5ly0_B1e-252978112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000489m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405176.14e-82LOB domain-containing protein 35
SwissprotQ9FFL34e-38LBD35_ARATH; LOB domain-containing protein 35
TrEMBLV4M3238e-89V4M323_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405180.11e-89(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-40LOB domain-containing protein 35