PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000498m
Common NameEUTSA_v10000498mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 114aa    MW: 13427.9 Da    PI: 11.3012
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000498mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.78.1e-3150103255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWt++LH+ F++aveqLGG+++AtPk+il+ m+vk Ltl+hvkSHLQ YR 
  Thhalv10000498m  50 PRLRWTTDLHRYFLHAVEQLGGEKRATPKKILKSMGVKTLTLSHVKSHLQVYRN 103
                      8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.89946106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2846104IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1748104IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2550104IPR006447Myb domain, plants
PfamPF002493.0E-951102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MKKEFKRHLM FRKSSPRDYR ALINPSMLSF LLNQVNMIDI VRSYSKSKMP RLRWTTDLHR  60
YFLHAVEQLG GEKRATPKKI LKSMGVKTLT LSHVKSHLQV YRNMKHEESI QGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1651106358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1651106358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1651106358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1651106358Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000498m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014028.11e-47putative Myb family transcription factor At1g14600
SwissprotQ700D95e-22MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLV4NJZ51e-77V4NJZ5_EUTSA; Uncharacterized protein
STRINGXP_006405213.12e-78(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.18e-27G2-like family protein