PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000526m
Common NameEUTSA_v10000526mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 122aa    MW: 13755.7 Da    PI: 4.5593
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000526mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.91.2e-31595189
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleq 89
                     +C+aCkvl+  C+ +Cv+apyfp+++p+kf  +h++FGa+nv k+l++   ++ +re a+++l yeAear++dPv G+v+ i + ++++  
  Thhalv10000526m  5 PCSACKVLKSVCTGECVFAPYFPSTEPEKFDRMHRIFGAENVYKILSNEtfSPLQREYAVKALSYEAEARIQDPVTGCVEQIISAKNEIVA 95
                     7*********************************************876569999*****************************9999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.1384108IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-30595IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MASNPCSACK VLKSVCTGEC VFAPYFPSTE PEKFDRMHRI FGAENVYKIL SNETFSPLQR  60
EYAVKALSYE AEARIQDPVT GCVEQIISAK NEIVATMGSD KVREYNDIPM PDDFLMTQNQ  120
QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-28293897LOB family transfactor Ramosa2.1
5ly0_B4e-28293897LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000526m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405168.22e-82LOB domain-containing protein 35
SwissprotQ9FFL32e-39LBD35_ARATH; LOB domain-containing protein 35
TrEMBLV4L8A21e-86V4L8A2_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405167.12e-87(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.19e-42LOB domain-containing protein 35