PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000527m
Common NameEUTSA_v10000527mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 229aa    MW: 25534.4 Da    PI: 7.5003
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000527mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof103.41.3e-322176560
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      + cprC+s+ntkf yynny +sqPry Ck+Crr+Wt+GG+lr++P+Gg+ rk k 
  Thhalv10000527m 21 PRVCPRCNSDNTKFGYYNNYRVSQPRYICKNCRRHWTHGGTLRDIPIGGSGRKTKV 76
                     678**************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-201675IPR003851Zinc finger, Dof-type
PfamPF027014.9E-302275IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.5552276IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENSNIFAIG NNQVNEEKPP PRVCPRCNSD NTKFGYYNNY RVSQPRYICK NCRRHWTHGG  60
TLRDIPIGGS GRKTKVPKIN QPFVSQVVSV EIQQVNHHQP FLHVQETNEF TGTSDSSSTV  120
VPVGNHFSSL PEIHGDMVLP VQSFPPLDCL DFFDGSFYQD YCDIESNALI GNPLINQPIC  180
GQNQSCNNNM NMNHNASTSG SRGSSGTDNM NKNKCVPRSF YHMEKHGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000527m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014295.11e-148dof zinc finger protein DOF4.4
SwissprotQ9SUA92e-67DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4LRV11e-168V4LRV1_EUTSA; Uncharacterized protein
STRINGXP_006405061.11e-169(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-63Dof-type zinc finger domain-containing protein