PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000542m
Common NameEUTSA_v10000542mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 229aa    MW: 25593.4 Da    PI: 7.7933
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000542mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof102.42.8e-322177561
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      + cprC+s+ntkf yynny +sqPry Ck+Crr+Wt+GG+lr++P+Gg+ rk k+ 
  Thhalv10000542m 21 PRFCPRCNSDNTKFGYYNNYRVSQPRYICKNCRRHWTHGGTLRDIPIGGSGRKTKRP 77
                     567**************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-201676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.762276IPR003851Zinc finger, Dof-type
PfamPF027011.2E-292376IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENSNIFAIG NNQVNEEKPP PRFCPRCNSD NTKFGYYNNY RVSQPRYICK NCRRHWTHGG  60
TLRDIPIGGS GRKTKRPKIN QPSVSQVVSV EIQQVNHHQP FLHVQETNEF TGTSDSSSTV  120
VPVGNHFSSL PEIHGDMVLP VQSFPPLDCL DFFDGSFYQD YCDIESNALI GNLLINQPIC  180
GQNQSCNNNM NTNHNASTSG SRGSSGTDNM NKNKFVPRSF FHMEKHGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000542m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014294.11e-149dof zinc finger protein DOF4.4
SwissprotQ9SUA94e-67DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4M2T21e-169V4M2T2_EUTSA; Uncharacterized protein
STRINGXP_006405060.11e-169(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-62Dof-type zinc finger domain-containing protein