PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000593m
Common NameEUTSA_v10000593mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 166aa    MW: 18073.2 Da    PI: 4.5426
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000593mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.16e-3351071101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                      +C+aCkvl+  C+ +Cv+apyfp+++p+kf  vh++FGa+nv k+l++   ++ +re a+++l yeAea ++dP+ G+vg+ l++++ l++lk+
  Thhalv10000593m   5 PCSACKVLKSVCTGECVFAPYFPSTEPEKFDRVHRIFGAENVYKILSNEtfSPLQREYAVKALSYEAEAHIQDPITGCVGMSLAYEKILNNLKE 98 
                      7*********************************************876569999*************************************** PP

           DUF260  93 elallkeel 101
                      +++++k+e+
  Thhalv10000593m  99 QIVSAKNEI 107
                      ***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.3574107IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-315104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASNPCSACK VLKSVCTGEC VFAPYFPSTE PEKFDRVHRI FGAENVYKIL SNETFSPLQR  60
EYAVKALSYE AEAHIQDPIT GCVGMSLAYE KILNNLKEQI VSAKNEIVAT MGSDKVPEYN  120
DIPMPNDFLM TQNQQMGDNH RADEASTSAT PPASSGGTND TQQTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3021088112LOB family transfactor Ramosa2.1
5ly0_B5e-3021088112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000593m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405173.11e-122LOB domain-containing protein 35
SwissprotQ9FFL38e-47LBD35_ARATH; LOB domain-containing protein 35
TrEMBLV4NJW01e-121V4NJW0_EUTSA; Uncharacterized protein
STRINGXP_006405173.11e-121(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.16e-49LOB domain-containing protein 35