PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000621m
Common NameEUTSA_v10000621mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 211aa    MW: 23558 Da    PI: 6.6602
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000621mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof101.17.1e-322176560
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      + cprC+s+ntkf yynny +sqPry Ck+Crr+Wt+GG+lr++P+Gg+  k k+
  Thhalv10000621m 21 PRVCPRCNSDNTKFGYYNNYRVSQPRYICKNCRRHWTHGGTLRDIPIGGSGHKTKR 76
                     678***********************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-201676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.362276IPR003851Zinc finger, Dof-type
PfamPF027011.7E-292276IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MENSNIFAIG NNQVNEEKPP PRVCPRCNSD NTKFGYYNNY RVSQPRYICK NCRRHWTHGG  60
TLRDIPIGGS GHKTKRPKIN QPSVSQVVLV EIQQVNHHQP FLHVQETNEF TGTSDSSSTV  120
VPVGNHFGSL PEIHGDMGLP VQNFPPLDCL DFSDGSFYQD YCDVESNALI GNPLINQPIG  180
GHVNNYNNYC INQEAQNQSC NNNMNMNHTA *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000621m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405058.11e-142dof zinc finger protein DOF4.4
SwissprotQ9SUA95e-76DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4LVL41e-154V4LVL4_EUTSA; Uncharacterized protein
STRINGXP_006405059.11e-155(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-78Dof-type zinc finger domain-containing protein