PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000624m
Common NameEUTSA_v10000624mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 194aa    MW: 22013.3 Da    PI: 6.2227
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000624mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1048.5e-332277661
           zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +  prC+s+ntkf yynny +sqPryfCk+C+r+Wt+GG+lr++P+Gg+ rk k+ 
  Thhalv10000624m 22 RVFPRCNSDNTKFSYYNNYRVSQPRYFCKNCHRHWTHGGTLRDIPIGGSGRKTKRP 77
                     678*************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-201976IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.0892276IPR003851Zinc finger, Dof-type
PfamPF027011.2E-282476IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEKSNIFVIG NNQVNEEKPP RRVFPRCNSD NTKFSYYNNY RVSQPRYFCK NCHRHWTHGG  60
TLRDIPIGGS GRKTKRPKIN QPSVSQVVSV EIQQVNHHQP FLHVQETNEF TGTSDSSSST  120
VVPAGNHFSS LPEIHGDMVL PVQSFPPLDC LDFSDESFYQ DYCDVESNAL IGNPLINQPI  180
GEPELQQYYE HES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000624m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014299.11e-133dof zinc finger protein DOF4.4
SwissprotQ9SUA97e-73DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4LRV41e-142V4LRV4_EUTSA; Uncharacterized protein
STRINGXP_006405066.11e-142(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-64Dof-type zinc finger domain-containing protein