PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10000776m

Common Name

EUTSA_v10000776mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HD-ZIP

Protein Properties

Length: 838aa MW: 93304.2 Da PI: 5.336

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10000776m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.7e-21	112	167	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k Thhalv10000776m 112 KKRYHRHTNRQIQEMEALFKENPHPDDKQRQRLSHELGLKPRQVKFWFQNRRTQMK 167 688999***********************************************998 PP
2	START	136.8	2.3e-43	325	565	2	206
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS.................SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv................dsgealrasgvvdmvlallveellddkeq 71 +a +++qel k+ eep+W + +n++e+++ f+ ++ ea++a +vv+m++ +lv +l+ + Thhalv10000776m 325 FAVSCLQELTKMCNTEEPLWIEKKsdkiggkiLCLNEEEYMRLFPW--PmenhnnnnnnnnnkggFRREASKANTVVIMNSITLVDAFLNAD-K 415 6788999***********99886777766644566666666642..134566889999999999***********************. PP T-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS..--.....-TTSEE-EES CS START 72 Wdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqk..ppe....sssvvRaell 148 W+e++ +a+t++ issg g l lm+aelq+lsplvp R+ +f+Ry +q + g w+ivd +ds + +p +++ R + Thhalv10000776m 416 WSEMFCsivaRAKTVQIISSGvsgasGSLLLMYAELQVLSPLVPtREAYFLRYVEQnAETGNWAIVDFPIDSFHDqiQPLnttnTPNEYR--RK 507 ***99999******************************************99******99986433113334445666666..8 PP SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 pSg++i++++ng+s+v wvehv++++r++h+ + vksg+a+ga++w+ lqrqce+ Thhalv10000776m 508 PSGCIIQDMPNGYSQVKWVEHVEVDERHVHETFAEYVKSGTAFGANRWLDVLQRQCER 565 ********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.28E-20	102	170	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-21	106	175	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.767	109	169	IPR001356	Homeobox domain
SMART	SM00389	6.4E-19	110	173	IPR001356	Homeobox domain
CDD	cd00086	3.64E-19	112	170	No hit	No description
Pfam	PF00046	2.4E-18	112	167	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.727	315	568	IPR002913	START domain
SuperFamily	SSF55961	1.92E-29	316	567	No hit	No description
CDD	cd08875	1.70E-102	319	564	No hit	No description
SMART	SM00234	4.8E-21	324	565	IPR002913	START domain
Pfam	PF01852	7.0E-36	326	565	IPR002913	START domain
SuperFamily	SSF55961	2.47E-14	601	816	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MLTIGEGNVM TSDNRFASPP PPSSSSPATI QNPNFNFIPF NSFSSIIPKE EHGMMSMMMM 60 MGDGAVEEMM ENGSVGGSFG SGSEQAEDPK SGNEFDGNEL QDDEQQPPPA KKKRYHRHTN 120 RQIQEMEALF KENPHPDDKQ RQRLSHELGL KPRQVKFWFQ NRRTQMKAQQ DRAENVMLRA 180 DNDNLKSENS HLQAELRCLS CPSCGGPTVL GDIPFNELHI ENCRLREELD RLCSIASRYT 240 GRPMQSMPSS QPLMNPPAPE LPHQQPSLEL DMSVYAGNFP EHPCSDLMLL PPQDTACFFP 300 DQTNNNSNNN NMLLEDEEKV VAMEFAVSCL QELTKMCNTE EPLWIEKKSD KIGGKILCLN 360 EEEYMRLFPW PMENHNNNNN NNNNKGGFRR EASKANTVVI MNSITLVDAF LNADKWSEMF 420 CSIVARAKTV QIISSGVSGA SGSLLLMYAE LQVLSPLVPT REAYFLRYVE QNAETGNWAI 480 VDFPIDSFHD QIQPLNTTNT PNEYRRKPSG CIIQDMPNGY SQVKWVEHVE VDERHVHETF 540 AEYVKSGTAF GANRWLDVLQ RQCERMASQM ARNITDLGVI RSAEARRNMM RLSQRMMRTF 600 CVNISTSYGQ SWTALSETSK DTVRITTRKT CEPGQPTGVV LAAVSTTWLP FSHLKVFDLL 660 RDQHHHSLLE VLFNGNSPHE IAHIANGSHP GNCISLLRIN VASNSWHNVE LMLQESCIDN 720 SGSLIVYSSV DVDSIQHAMN GEDPSGIPLL PLGFSVVPVD PPDHVEGNSV NSLSPPSCLL 780 TVGIQVLASN VPTAKPNLST VTTINNHLCS IVNQITSVLS STISPAIASA SALSKQE*

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MLTIGEGNVM TSDNRFASPP PPSSSSPATI QNPNFNFIPF NSFSSIIPKE EHGMMSMMMM  60
MGDGAVEEMM ENGSVGGSFG SGSEQAEDPK SGNEFDGNEL QDDEQQPPPA KKKRYHRHTN  120
RQIQEMEALF KENPHPDDKQ RQRLSHELGL KPRQVKFWFQ NRRTQMKAQQ DRAENVMLRA  180
DNDNLKSENS HLQAELRCLS CPSCGGPTVL GDIPFNELHI ENCRLREELD RLCSIASRYT  240
GRPMQSMPSS QPLMNPPAPE LPHQQPSLEL DMSVYAGNFP EHPCSDLMLL PPQDTACFFP  300
DQTNNNSNNN NMLLEDEEKV VAMEFAVSCL QELTKMCNTE EPLWIEKKSD KIGGKILCLN  360
EEEYMRLFPW PMENHNNNNN NNNNKGGFRR EASKANTVVI MNSITLVDAF LNADKWSEMF  420
CSIVARAKTV QIISSGVSGA SGSLLLMYAE LQVLSPLVPT REAYFLRYVE QNAETGNWAI  480
VDFPIDSFHD QIQPLNTTNT PNEYRRKPSG CIIQDMPNGY SQVKWVEHVE VDERHVHETF  540
AEYVKSGTAF GANRWLDVLQ RQCERMASQM ARNITDLGVI RSAEARRNMM RLSQRMMRTF  600
CVNISTSYGQ SWTALSETSK DTVRITTRKT CEPGQPTGVV LAAVSTTWLP FSHLKVFDLL  660
RDQHHHSLLE VLFNGNSPHE IAHIANGSHP GNCISLLRIN VASNSWHNVE LMLQESCIDN  720
SGSLIVYSSV DVDSIQHAMN GEDPSGIPLL PLGFSVVPVD PPDHVEGNSV NSLSPPSCLL  780
TVGIQVLASN VPTAKPNLST VTTINNHLCS IVNQITSVLS STISPAIASA SALSKQE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10000776m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013394	1e-145	AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBank	CP002688	1e-145	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006398384.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_024011151.1	0.0	homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	V4LBR7	0.0	V4LBR7_EUTSA; Uncharacterized protein
STRING	XP_006398384.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4356	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Link Out ? help Back to Top
Phytozome	Thhalv10000776m
Entrez Gene	18016245

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]