PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001097m
Common NameEUTSA_v10001097mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 442aa    MW: 50635.3 Da    PI: 9.1602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001097mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++++  ++++kqck rw+ +l
  Thhalv10001097m  8 GVWKNTEDEILKAAVMKYGKNQWARISSHLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding37.17.2e-1260103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT+eEde+l+++ k+l++  W+tIa  +g  Rt+ qc +r+ k+l
  Thhalv10001097m  60 TEWTKEEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.617257IPR017930Myb domain
SMARTSM007171.2E-15655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-19960IPR009057Homeodomain-like
PfamPF139212.7E-141070No hitNo description
CDDcd001676.61E-121053No hitNo description
SuperFamilySSF466892.09E-2133109IPR009057Homeodomain-like
CDDcd116592.64E-3055106No hitNo description
SMARTSM007177.2E-1358105IPR001005SANT/Myb domain
PROSITE profilePS5129416.92858107IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-1461104IPR009057Homeodomain-like
PfamPF118312.0E-14340437IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSHLVRK SAKQCKARWY EWLDPSIKKT  60
EWTKEEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYEAADDDP  120
RKLRSGEIDP NTESKPARPD PVDMDEYEKE MLCEARARLA NTRGKKAKRK AREEQLEEAT  180
RLASLQKRRE LKAAGIDGRH RKRKRKGINY NARIPFEKRA PVGFYDTADE DHRPADQVKF  240
PTTIEQLEGK RRADVEAQLR KQDVARNKIA QRQDASAAIL QANKLNDPEV VRKRSKLMLP  300
PPQISDHELE EIAKMGYASD LLAENEELTE GSAATRALLA NYSQTPMRTP QRTPAGKGDA  360
IMMEAENLAR LRDSQRREEA RRSLRSGLTG LPQAKNEYQI VAQPPPEESE EPEEKIEEDM  420
SDRIAREKAE EEARHQAFPQ V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-13823733374Cell division cycle 5-like protein
5xjc_L1e-13823733374Cell division cycle 5-like protein
5yzg_L1e-13823733374Cell division cycle 5-like protein
5z56_L1e-13823733374Cell division cycle 5-like protein
5z57_L1e-13823733374Cell division cycle 5-like protein
5z58_L1e-13823733374Cell division cycle 5-like protein
6ff4_L1e-13823733374Cell division cycle 5-like protein
6ff7_L1e-13823733374Cell division cycle 5-like protein
6icz_L1e-13823733374Cell division cycle 5-like protein
6id0_L1e-13823733374Cell division cycle 5-like protein
6id1_L1e-13823733374Cell division cycle 5-like protein
6qdv_O1e-13823733374Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186205KRRELKAAGIDGRHRKRKRK
2200205RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001097m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3168900.0AK316890.1 Arabidopsis thaliana AT1G09770 mRNA, partial cds, clone: RAFL07-59-A16.
GenBankAY0930570.0AY093057.1 Arabidopsis thaliana putative Myb DNA-binding protein (At1g09770) mRNA, complete cds.
GenBankAY5195530.0AY519553.1 Arabidopsis thaliana MYB transcription factor (At1g09770) mRNA, complete cds.
GenBankBT0088010.0BT008801.1 Arabidopsis thaliana At1g09770 gene, complete cds.
GenBankD584240.0D58424.1 Arabidopsis thaliana AtCDC5 mRNA for Myb-like DNA binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398166.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLV4L7K40.0V4L7K4_EUTSA; Uncharacterized protein
STRINGXP_006398166.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16532913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]