PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001113m
Common NameEUTSA_v10001113mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 202aa    MW: 22878.9 Da    PI: 9.6311
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001113mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1862116256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L  rq+ vWFqNrRa+ k
  Thhalv10001113m  62 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 116
                      78889************************************************98 PP
2HD-ZIP_I/II118.53.7e-3862149188
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                      +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr
  Thhalv10001113m  62 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELR 149
                      69*************************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-1846116IPR009057Homeodomain-like
SuperFamilySSF466893.08E-1848119IPR009057Homeodomain-like
PROSITE profilePS5007117.13558118IPR001356Homeobox domain
SMARTSM003892.4E-1760122IPR001356Homeobox domain
CDDcd000861.11E-1561119No hitNo description
PfamPF000466.6E-1662116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PfamPF021834.3E-9118151IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.6E-21118161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAILPENSSN LDLSISVPGF SSSPPSDEGS GRGREQLKLD MNRLPSSEED EEFSHGGSAP  60
PRKKLRLTRE QSRLLEDSFR QNHTLNPKQK EALAKHLMLR PRQIEVWFQN RRARSKLKQT  120
EMECEYLKRW FGSLTEQNHR LHREVEELRT MKVGPPTVTS TASLTMCPRC ERVTTATSPY  180
VVDGGGGVLA KKTLPTQERE H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001113m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534480.0AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398531.21e-148LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-17
SwissprotQ8S9N61e-117ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLE4MY511e-146E4MY51_EUTHA; mRNA, clone: RTFL01-26-G16
TrEMBLV4L8N51e-146V4L8N5_EUTSA; Uncharacterized protein
STRINGXP_006398531.11e-147(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-119homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]