PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001151m
Common NameEUTSA_v10001151mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18087.3 Da    PI: 11.0388
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001151mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-081157349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ie +  r    sk r+gi+ KA+ L  L d+evav i s+ g+ y +
  Thhalv10001151m 11 IEKSLTRRMIISKCRAGIFNKANALARLHDVEVAVFINSPAGRQYLF 57
                     88899999999*******************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.624161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-13166IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-9160IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-81157IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGFRKIKINY IEKSLTRRMI ISKCRAGIFN KANALARLHD VEVAVFINSP AGRQYLFRSP  60
GFNSYSRKSG RSSASLKKAR ILKLQAKLVG VMKKLEAEKQ REKVLKKRFE ETLQKNNMKE  120
IENSSLEELI AFKEKLETLR KTVNQKRMEM EASLAY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001151m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398326.11e-108agamous-like MADS-box protein AGL29
TrEMBLV4L7Z81e-107V4L7Z8_EUTSA; Uncharacterized protein
STRINGXP_006398326.11e-107(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1548036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.13e-25AGAMOUS-like 102