PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001222m
Common NameEUTSA_v10001222mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family BES1
Protein Properties Length: 674aa    MW: 75444.7 Da    PI: 6.243
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001222mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822157.78e-49802281144
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 
                      gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+    +++++ ++s+es+l
  Thhalv10001222m  80 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQFPTRSIESPL 169
                      6899***********************************************************************9....999**********9 PP

           DUF822  95 q.sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvls 144
                      + s+lk++++a+   +++++++ ++ +sp+sl s+ +a++        +  +p+ sv +
  Thhalv10001222m 170 SsSTLKNCTKATLDCQQHPVLRIEENLSPVSLGSVVIAENdhpgngryTGASPIASVGC 228
                      9899********************************99987777666655566666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.1E-4681225IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.16E-154248674IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.8E-166251674IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.6E-82256649IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49287301IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49308326IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49330351IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49418440IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49491510IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49525541IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49542553IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49560583IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.6E-49598620IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MHTLNTTGSR DPINPNPNPN SNLDPDQFPH RNNNHPQSRR PRGFAAAAAA SMCPAESDNG  60
NIAGIGGGET SSGGGGGGGG GKGKREREKE KERTKLRERH RRAITSRMLA GLRQYGNFPL  120
PARADMNDVI AALAREAGWS VDADGTTYRQ SHQPNHVVQF PTRSIESPLS SSTLKNCTKA  180
TLDCQQHPVL RIEENLSPVS LGSVVIAEND HPGNGRYTGA SPIASVGCVE ANQLIQDVHS  240
TEPRTGFTES FYVPVYAMLP VGIIDNFGQL GDPVGVKQEL SYMKSLNVDG VVIDCWWGIV  300
EGWNPQKYVW SGYKELFNLI REFKLKLQVV MAFHEYGGNA VSLPQWVLEI GKDNPDIFFT  360
DREGRRNFEC LNWCIDKERV LHGRTGIEVY FDFMRSFRSE FDDFFEEGLI TAIEIGLGAS  420
GELKYPSFPE RMGWIYPGIG EFQCYDKYSQ TSLLKEAKSR GFAFWGKGPE NAGQYNSQPH  480
ETGFFQERGE YDSYYGRFFL NWYSQLLIGH AENVLSLANL AFEETKIIVK IPAIYWSYKT  540
ASHAAELTAG YYNPSNRDGY SLLFETLKKY SVTVKFVCPG QLMSTNEHEE GLADPEGLSW  600
QVINAAWDKG LLIGGENAIT CFDREGCMRL IEMAKPRNHP DSCHFSFFTY RQPSPLVQGS  660
SCFADLDYFI KRMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11825267411442Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001222m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398198.20.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLV4N3420.0V4N342_EUTSA; Beta-amylase (Fragment)
STRINGXP_006398198.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]