PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001342m
Common NameEUTSA_v10001342mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family BES1
Protein Properties Length: 688aa    MW: 76419 Da    PI: 6.4718
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001342mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822153.81.3e-47642071135
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas.. 87 
                      ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp+  ++  a+gssas  
  Thhalv10001342m  64 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGTKPPggSSVVAGGSSAShm 157
                      689******************************************************************9888999999955555566655565 PP

           DUF822  88 aspesslq..sslkssalaspvesysaspksssfpspssldsislasaas 135
                      as++ss      ++s+  +sp+e  s+++k +  p+ps +d  +++s++ 
  Thhalv10001342m 158 ASQQSSHPaiRGVSSTGHRSPTELNSCRMKGVFAPAPSPYDLPPTQSPEL 207
                      77777776656688999************************999997643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.8E-4065196IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.53E-171242685IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.809.3E-185245683IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.9E-93251671IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-63282296IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-63303321IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-63325346IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060329337IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007501.2E-63418440IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-63491510IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-63525541IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-63542553IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-63560583IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-63600622IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MATDMQKLLA TSEEDDDEEM DTDVKEEDDG DQRNRGTRAA SGSSNDEFMF QQSLQDQVDT  60
PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE  120
AGWVVLPDGT TFPSKSQGTK PPGGSSVVAG GSSASHMASQ QSSHPAIRGV SSTGHRSPTE  180
LNSCRMKGVF APAPSPYDLP PTQSPELVGC ANKAEGLIGC SLGVINSKQI LEIPPNLTEQ  240
DFSGTPYVPV YVMLPLGVIN MKCELADRDG LLKHLRILKS IHVDGVKVDC WWGIAEGHSP  300
QEYNWNGYRQ LFQIVRDLNL KIQVLMSFHE CGGNVGDDVC IPLPHWVAEI GRTNPDIYFT  360
DREGRRNPEC LSWGIDKERV LRGRTALEVY FDYMRSFRIE LAEFLDDGVV SMVEIGLGPC  420
GELRYPSCPI KHGWRYPGVG EFQCYDKYLL KSLRKAAESR GHLFWARGPD NAGSYNSQPQ  480
GTGFFCDGGD YDGLYGRFFL KWYSQVLIDH ADKILSLAKL VFDSSCIAAK LPDVHWWYRT  540
ASHAAELTAG FYNPSNRDGY AAIASALKKH GATLSFVSGE VQILNRPDDF SGALGEPDAV  600
AWQVLNAAWD TNTPIARENS LPCHDRVGYN KMLESVKFPN DPDRRRLSSF AYSRLIPALM  660
EGHNIVEFER FVKKLHGEAV IDHHQQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13724767811444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001342m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397762.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLV4KMT30.0V4KMT3_EUTSA; Beta-amylase
STRINGXP_006397762.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]