PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001399m
Common NameEUTSA_v10001399mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 526aa    MW: 56637.2 Da    PI: 8.8812
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001399mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.2e-11103127327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       + C +++rtG C yG+rC+++H++
  Thhalv10001399m 103 APDCAYYMRTGVCGYGNRCRYNHPR 127
                      589********************96 PP
2zf-CCCH40.35.4e-13148172327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+f+++tGtCk+G++CkF+H++
  Thhalv10001399m 148 EPPCQFYLKTGTCKFGASCKFHHPK 172
                      79*********************96 PP
3zf-CCCH36.11.1e-11193218227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+++++tG+Ck+G +CkF+H++
  Thhalv10001399m 193 GEKDCSYYLKTGQCKFGITCKFHHPQ 218
                      5789********************97 PP
4zf-CCCH37.63.7e-12346372127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G +CkF+H++
  Thhalv10001399m 346 PGEPECQYYLKTGDCKFGTSCKFHHPR 372
                      5799*********************96 PP
5zf-CCCH32.21.8e-10393418227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +  +C f+ ++G+Ck+G++CkF H++
  Thhalv10001399m 393 GVQRCTFYVQNGFCKFGSTCKFDHPM 418
                      6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.882100128IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5100127IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6105129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5106127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901145173IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-7145172IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10148172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6148173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5150171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568191219IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5191218IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9193218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4197217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356345373IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5345372IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9347372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6349374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5351373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23391419IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5391418IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8393418IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6394422IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4397417IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MVKESLLCSS SLGFLRRERE RERKKKKEAQ SITVEEASPL SFRCNLALEI GFSGLSMDMY  60
GRNPPMNASQ PAEWTPGDAD TGLDESMWQL RLGSETYPER PGAPDCAYYM RTGVCGYGNR  120
CRYNHPRDRA TVEAAVRATG QYPERIGEPP CQFYLKTGTC KFGASCKFHH PKNAGGSMSH  180
VPLNIYGYPV REGEKDCSYY LKTGQCKFGI TCKFHHPQPA GTTVPPPPAS APQFYPSVQS  240
LMPDQYGGPS SSLRVARTLL PGSYMQGAYG PMLLTPGVVP IPGWSPYSAP VSPALSPGAQ  300
HAVGATSLYG VTQLSSTTAS LPPGVYPSLS SPTGILQKEQ TFPERPGEPE CQYYLKTGDC  360
KFGTSCKFHH PRDRIPPRAN CVLSPIGLPL RPGVQRCTFY VQNGFCKFGS TCKFDHPMGT  420
IRYNPSASSL ADAPVAPYPV SSLLGALAAA PSSSSTELIS GAAKDPYLSG LPTSRSTSNI  480
SAGLIFSQST GGSVPFSDLQ LSSQTSLPLT GSRITRQGRE IRRSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11625RERERERKKK
22227RKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001399m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010819.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLV4LAM60.0V4LAM6_EUTSA; Uncharacterized protein
STRINGXP_006397979.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein