PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10001648m

Common Name

EUTSA_v10001648mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 194aa MW: 22583 Da PI: 9.653

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10001648m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.3	3.9e-26	24	112	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+++g+i r+f C+keg+ + + k + r+ r++tr gCka+++vk +++gkw++tk+++eHnH+l+ Thhalv10001648m 24 FYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHCVSIRGKFGSVRKLRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLV 112 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-23	24	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEDDLTIEPR EGIEFESEDA AKMFYDDYSR RLGFVMRVMS CRRSEKDGRI LARRFGCNKE 60 GHCVSIRGKF GSVRKLRPST REGCKAMIHV KYDRSGKWVI TKFVKEHNHP LVVAPREARH 120 TLDDKDKRIQ ELTIELRNKK RLCAAYKEQL DAFTKIVEEH SNRIAKKVES VVNSLKEFEP 180 IELELLRSKQ DAL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10001648m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002891	0.0	BT002891.1 Arabidopsis thaliana clone RAFL14-97-G02 (R20421) unknown protein (At2g43280) mRNA, complete cds.
GenBank	BT004409	0.0	BT004409.1 Arabidopsis thaliana clone U20421 unknown protein (At2g43280) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397492.1	1e-141	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	2e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4KM15	1e-139	V4KM15_EUTSA; Uncharacterized protein
STRING	XP_006397492.1	1e-140	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-131	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10001648m
Entrez Gene	18015796

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]