PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001778m
Common NameEUTSA_v10001778mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 194aa    MW: 21547.6 Da    PI: 7.0157
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001778mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.98.1e-39161161100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lr+kC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l++lp ++r da+ +l+yeA ar+rdPvyG+vg+++ lq+q+++l+ae
  Thhalv10001778m  16 PCGACKFLRKKCVRGCVFAPYFDAEQgTSRFAAVHKVFGASNASKMLQRLPLNKRLDAVVTLCYEALARLRDPVYGSVGHLFYLQHQVMNLQAE 109
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkee 100
                      la+++++
  Thhalv10001778m 110 LAHVQAR 116
                      **99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.43315117IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-3816114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMTGNLNGGG RGGEGPCGAC KFLRKKCVRG CVFAPYFDAE QGTSRFAAVH KVFGASNASK  60
MLQRLPLNKR LDAVVTLCYE ALARLRDPVY GSVGHLFYLQ HQVMNLQAEL AHVQARLSTF  120
QRFSLEPPQE MQEPPFDLAH NNEYPLETTN LDFVWEEGQL PQAGNEDGEF QELAMQFVSK  180
YLPATKLPSR TFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-35121147110LOB family transfactor Ramosa2.1
5ly0_B7e-35121147110LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001778m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397722.11e-143LOB domain-containing protein 19
SwissprotO221321e-99LBD19_ARATH; LOB domain-containing protein 19
TrEMBLV4KMP11e-142V4KMP1_EUTSA; Uncharacterized protein
STRINGXP_006397722.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-102LOB domain-containing protein 19