PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001784m
Common NameEUTSA_v10001784mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 644aa    MW: 70323.9 Da    PI: 5.142
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001784mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.27.6e-942716422374
             GRAS   2 velLlecAeavss..gdle......laqalLarlsel.aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                      +e+L+++Ae + +  + ++      laq +Larl+++ +s++ +   p+qR+a++++eAL + +++         +p   +++n + ++aa++ 
  Thhalv10001784m 271 IEQLFNAAELIGTtgN-NNngdhtvLAQGILARLNHHlNSNNYTnkpPFQRAASHIAEALLSLIHD--------ASPPLITPENLILRIAAYRS 355
                      5678888888765431.222444469**********964443334669*****************9........4444555678********** PP

             GRAS  84 fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLas....RpegppslRiTgvgspesg..skeeleetgerLakf 168
                      fse+sP+l+f ++taNq Ilea + e   er+HiiDfd+++G+QW +L+q+Las    R+++ +sl+iT++++p s+  ++ el+ t+e+L++f
  Thhalv10001784m 356 FSETSPFLQFVNFTANQSILEACNDElgfERIHIIDFDVGYGGQWSSLMQELASggggRRRNRASLKITVFAPPPSTvsDEFELRFTEENLRSF 449
                      ************************99999************************84444668899*********9988899************** PP

             GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                      A e+++pfe+++l  + l +  ++ +++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++a
  Thhalv10001784m 450 AGEVKIPFEIELLSLELLLNPAYWPISLRSsdKEAIAVNLPIKSVVSG--------YLPLILRFIKQISPNVVVCSDRGCDRNDAPFPNAVIHA 535
                      ************97787778889988887777**********666554........5677********************************** PP

             GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                      l+y+++l++sl+a+   ++++++++Er++++++i++++ +++++     e+   Wr+ ++++GF+p++ls++a++qa++ll++ +++g++ve++
  Thhalv10001784m 536 LQYHTTLLESLDAN---QNQDDSSIERFWVQPSIEKLLVKRHRW----IERSPPWRSLFTQCGFSPASLSQTAEAQAECLLQRNPVRGFHVEKR 622
                      **************...89*************************....89999***************************************** PP

             GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                      + slv++W++++Lv+vSaW+
  Thhalv10001784m 623 QSSLVMCWQRKELVTVSAWK 642
                      *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.576251622IPR005202Transcription factor GRAS
PfamPF035142.6E-91271642IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGVPSFY SDSQKIWFNQ DKTGIGREEA EEEDLGYVVG GGLPEPTSVL  60
DALRSPSPLA SHSSTTTTTT LSSSHGGGVV TATATAGDDK CSQMGLDDLD GGLSASSPGQ  120
EQSILRLIMD PGSGFGVFDP GFGFGSGSVP ASENSNPLLS CSFPFQEQAA NPAALINPSP  180
NQNQNPCLFS NPPSTPPAKR FNSGSHQPVF PFSDPDPGHD PFLVRRQQQF QFPFQFHQHQ  240
QIPSSSSSAA ALVPVPIPPP VMAGDDQSVI IEQLFNAAEL IGTTGNNNNG DHTVLAQGIL  300
ARLNHHLNSN NYTNKPPFQR AASHIAEALL SLIHDASPPL ITPENLILRI AAYRSFSETS  360
PFLQFVNFTA NQSILEACND ELGFERIHII DFDVGYGGQW SSLMQELASG GGGRRRNRAS  420
LKITVFAPPP STVSDEFELR FTEENLRSFA GEVKIPFEIE LLSLELLLNP AYWPISLRSS  480
DKEAIAVNLP IKSVVSGYLP LILRFIKQIS PNVVVCSDRG CDRNDAPFPN AVIHALQYHT  540
TLLESLDANQ NQDDSSIERF WVQPSIEKLL VKRHRWIERS PPWRSLFTQC GFSPASLSQT  600
AEAQAECLLQ RNPVRGFHVE KRQSSLVMCW QRKELVTVSA WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2731764239375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001784m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0537600.0BT053760.1 Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397697.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLV4KML60.0V4KML6_EUTSA; Uncharacterized protein
STRINGXP_006397697.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]