PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10001803m

Common Name

EUTSA_v10001803mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 337aa MW: 38726.6 Da PI: 7.3262

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10001803m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.5e-13	162	212	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N ++ Lr+l+P++ + ++ + a+i+ A++++k L Thhalv10001803m 162 QRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YIQRGDQASIVGGAIDFVKIL 212 79**************************...9*************99866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.94E-10	160	217	No hit	No description
PROSITE profile	PS50888	14.672	161	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-15	161	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-10	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-13	162	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-10	167	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
SLDQKVNVRR SIEVEGSAEY KKKFLEDEQY STPSLQDTRI PFLQMLQQSE EDSSSVLSFK 60 DPNFLALLSL QTLEKPWELE NYLPHEVPEF HSPIHSETNH YYHNPSLEAI SSQEYQLNPI 120 DNVNSRRKRR NNNNNLATSM TREKRKRRRT KPTKNTEEME TQRMTHIAVE RNRRRQMNVH 180 LNSLRSLIPS SYIQRGDQAS IVGGAIDFVK ILEQHLQSLE AQKITQQTDM CNSDNPSGIP 240 SSELRASTEE QTSKLRIDAT VIESHVNLKI QCLRKQGQLL RSIILLEKLR FTVLHLNITS 300 PSNASVSYSF NLKMEEDCNL GSADEITAAV RQIFDC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	148	KRRNNNNNLATSMTREKRKRRR
2	143	148	KRKRRR
3	144	148	RKRRR
4	144	149	RKRRRT
5	144	151	RKRRRTKP
6	162	173	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10001803m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB678434	1e-167	AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397873.2	0.0	transcription factor bHLH70 isoform X1
Swissprot	O81037	1e-173	BH070_ARATH; Transcription factor bHLH70
TrEMBL	V4N2C0	0.0	V4N2C0_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006397873.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-163	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10001803m
Entrez Gene	18015802

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]