PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10001860m

Common Name

EUTSA_v10001860mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

TCP

Protein Properties

Length: 382aa MW: 40196.6 Da PI: 7.4426

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10001860m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.4	2.1e-37	53	154	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 k++++++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++ ++s +s++s+ s++ Thhalv10001860m 53 VKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSTGSTLSAPpsksapla 146 699****************************************************************999888888888876665544444444 PP TCP 89 .......k 89 + Thhalv10001860m 147 flydgthN 154 44444430 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.56	57	111	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.2E-35	57	168	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEPHQNDIDH HHNQTTGSAQ LVPFMGPNSG SISATTTTTT NAVSTISAPK TIVKRPSKDR 60 HIKVDGRGRR IRMPAICAAR VFQLTRELQH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN 120 FSTLNVSLRS TGSTLSAPPS KSAPLAFLYD GTHNNTSSDD PRKFIGRTAA QNAAVFGFQQ 180 QLYPPQHIMN ESNPLTKSFR EEALFKDPNL LDQEPGSSSP KPESEAPDQE SDLTRSRTQN 240 MIPPMWAVAA PTPASTNAGS AFWMLPVGGR GGGSAITQDP SQHMWAFNPG HYPSRIGSVQ 300 LGSMLVQQTV GGQQVGLGVA ESNNLGLFSG GGGGDGGYGG GGGSGGCVGL GMSLKQKAQR 360 HQQHQVSDTT EDQNPTIAGS P*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEPHQNDIDH HHNQTTGSAQ LVPFMGPNSG SISATTTTTT NAVSTISAPK TIVKRPSKDR  60
HIKVDGRGRR IRMPAICAAR VFQLTRELQH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN  120
FSTLNVSLRS TGSTLSAPPS KSAPLAFLYD GTHNNTSSDD PRKFIGRTAA QNAAVFGFQQ  180
QLYPPQHIMN ESNPLTKSFR EEALFKDPNL LDQEPGSSSP KPESEAPDQE SDLTRSRTQN  240
MIPPMWAVAA PTPASTNAGS AFWMLPVGGR GGGSAITQDP SQHMWAFNPG HYPSRIGSVQ  300
LGSMLVQQTV GGQQVGLGVA ESNNLGLFSG GGGGDGGYGG GGGSGGCVGL GMSLKQKAQR  360
HQQHQVSDTT EDQNPTIAGS P*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10001860m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397460.1	0.0	transcription factor TCP23
Swissprot	Q9LQF0	1e-151	TCP23_ARATH; Transcription factor TCP23
TrEMBL	V4LGJ9	0.0	V4LGJ9_EUTSA; Uncharacterized protein
STRING	XP_006397460.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-127	TCP family protein

Link Out ? help Back to Top
Phytozome	Thhalv10001860m
Entrez Gene	18015417