PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10001905m

Common Name

EUTSA_v10001905mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 855aa MW: 96628.3 Da PI: 6.7609

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10001905m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32	4e-10	55	123	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eY++++GF+ + +++ t r+f Cs + +++++ + +C+a++++++++++kw+vtkl++eH+H l+ Thhalv10001905m 55 FYDEYSRQLGFTSKPLAKTD-------TAREFGCSSSKRSKRRPAE-------------SCDAMVRIEMKSQDKWVVTKLVKEHTHGLS 123 99999999999887765444.......4899999987666665555.............9**************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-6	82	123	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-24	250	341	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.633	528	564	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-9	533	562	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-8	539	566	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MDIHLADEVL PMVNTHGIGD DRDAESSDCS GTNPLGIAEP CVGMEFHSEK DAKSFYDEYS 60 RQLGFTSKPL AKTDTAREFG CSSSKRSKRR PAESCDAMVR IEMKSQDKWV VTKLVKEHTH 120 GLSSPNTLHC LRPRRHFANS EKTIQEGVSV PSGMMYVSMD GIRVPLEPSY RGARSASKDS 180 NRVNYGPMAT NTKRTLGRDA HNLLEYFKRM QAENPGFFYA VQLDEDNQMT NVFWADSRSR 240 IAYTHFGDTV TLDTRYRCNQ FRVPFAPFTG VNHHGQTILF GCALILDESD ASFVWLFKTF 300 LTAMRDQSPV SLVTDQDRAI QIAVAQVFPG ARHCINKWDV LREGQEKLAH VCLAYPSFQV 360 ELYNCINFTE TIEEFESSWS SIIEKYDLGR HEWLSSLYNA RGQWVPVYFR DSFFAAVFPS 420 QGYPSSFFDG YVNQQTTLPM FFRLYERAME SWFEMEIDAD IDTVNTPPVL KTPSPMENQA 480 ANLFTRKIFA KFQEELVETF AYTANRIDDD GTNSTFRVAK FENDNKAYLV TFCYPEMRAN 540 CSCQMFEHSG ILCRHVLTVF TVTNILTLPP QYILRRWTRN AKSVVGLDEH VSENGHDSLI 600 HRYNHLCREA IKYAEEGAIT TETYSIALGA LGEGGKKVSA VRKSLSRATP PNSHCVGIGS 660 DEKTSLSATD TTPLLWPRQD EMLRRFNLND GGARAQSVAD LNLPRMAPVS LHRDDGAPEN 720 MVALPCLKSM TWAWESKNTT PGGRVAVIKL KLHDYRKFPS ADMDVKFQLS SVTLEPMLRS 780 MAYISEQLSS PANRVAVINL KLQDTETTTG ESEVKFQVSR DTLGAMLRSM AYIREQLSIV 840 GEIQTEPQAK KQRK*

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MDIHLADEVL PMVNTHGIGD DRDAESSDCS GTNPLGIAEP CVGMEFHSEK DAKSFYDEYS  60
RQLGFTSKPL AKTDTAREFG CSSSKRSKRR PAESCDAMVR IEMKSQDKWV VTKLVKEHTH  120
GLSSPNTLHC LRPRRHFANS EKTIQEGVSV PSGMMYVSMD GIRVPLEPSY RGARSASKDS  180
NRVNYGPMAT NTKRTLGRDA HNLLEYFKRM QAENPGFFYA VQLDEDNQMT NVFWADSRSR  240
IAYTHFGDTV TLDTRYRCNQ FRVPFAPFTG VNHHGQTILF GCALILDESD ASFVWLFKTF  300
LTAMRDQSPV SLVTDQDRAI QIAVAQVFPG ARHCINKWDV LREGQEKLAH VCLAYPSFQV  360
ELYNCINFTE TIEEFESSWS SIIEKYDLGR HEWLSSLYNA RGQWVPVYFR DSFFAAVFPS  420
QGYPSSFFDG YVNQQTTLPM FFRLYERAME SWFEMEIDAD IDTVNTPPVL KTPSPMENQA  480
ANLFTRKIFA KFQEELVETF AYTANRIDDD GTNSTFRVAK FENDNKAYLV TFCYPEMRAN  540
CSCQMFEHSG ILCRHVLTVF TVTNILTLPP QYILRRWTRN AKSVVGLDEH VSENGHDSLI  600
HRYNHLCREA IKYAEEGAIT TETYSIALGA LGEGGKKVSA VRKSLSRATP PNSHCVGIGS  660
DEKTSLSATD TTPLLWPRQD EMLRRFNLND GGARAQSVAD LNLPRMAPVS LHRDDGAPEN  720
MVALPCLKSM TWAWESKNTT PGGRVAVIKL KLHDYRKFPS ADMDVKFQLS SVTLEPMLRS  780
MAYISEQLSS PANRVAVINL KLQDTETTTG ESEVKFQVSR DTLGAMLRSM AYIREQLSIV  840
GEIQTEPQAK KQRK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10001905m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353320	0.0	AK353320.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-K11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408658.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	E4MXS3	0.0	E4MXS3_EUTHA; mRNA, clone: RTFL01-24-K11
TrEMBL	V4NTS1	0.0	V4NTS1_EUTSA; Uncharacterized protein
STRING	XP_006408658.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Thhalv10001905m
Entrez Gene	18025618

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]