PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10001938m
Common NameEUTSA_v10001938mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family EIL
Protein Properties Length: 582aa    MW: 66087.1 Da    PI: 6.2178
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10001938mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3510.95.7e-156514301354
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraW 94 
                      +el++rmw+d+m+lkrlke++ + +  ke  ++a+k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+W
  Thhalv10001938m  51 DELERRMWRDKMRLKRLKEQQGK-C--KEG-VDASKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREW 140
                      79*****************9997.5..788.9************************************************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--T CS
             EIN3  95 WkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglsk 188
                      Wk+kv+fdrngpaai+kyqa+n+i++g++++++ +  ++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP+Gke+ww++lgl+k
  Thhalv10001938m 141 WKDKVRFDRNGPAAIAKYQAENNISGGSNDCNSLAGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPNGKEEWWPQLGLPK 234
                      *********************************9************************************************************ PP

                      T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX..XXXXXXXXXXXXX CS
             EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss..slrkqspkvtlsc 278
                      +qg+ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee  +++++++  ++  s++ +s ++ +++
  Thhalv10001938m 235 EQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVVARELYPElcPPlsSSSVGSGSLLIND 328
                      ***************************************************************************8633545556********* PP

                      XXXXXXXXXXXXX.XXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXX CS
             EIN3 279 eqkedvegkkeskikhvqavktta.............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelif 343
                       +++dveg ++++  +v+++k +                              +++ +rkrk ++ + + +   + s tc++ q+++s+ +++f
  Thhalv10001938m 329 CSEYDVEGFEKEQ--DVEERKPEIvmmnpatsfgtgkmqqqfpvkeevvatmgNLEYARKRK-PNNDLNVMIMDRPSFTCENGQCPHSKINMGF 419
                      *******544444..35555554456789999*********************9*******9.77777777777799***************** PP

                      XXXXXXXXXXX CS
             EIN3 344 adknsisqney 354
                      +d++s++++++
  Thhalv10001938m 420 QDRSSRDNHQM 430
                      *********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.3E-13151300No hitNo description
Gene3DG3DSA:1.10.3180.104.5E-75175310IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.96E-61179303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MMMFNEMGMY GKMDFFSSTS LGEIDVCPLP QAEQDHPVVE EDYTDDEIDV DELERRMWRD  60
KMRLKRLKEQ QGKCKEGVDA SKQRQSQEQA RRKKMSRAQD GILKYMLKMM EVCKAQGFVY  120
GIIPEKGKPV TGASDNLREW WKDKVRFDRN GPAAIAKYQA ENNISGGSND CNSLAGPTPH  180
TLQELQDTTL GSLLSALMQH CDPPQRRFPL EKGVSPPWWP NGKEEWWPQL GLPKEQGPPP  240
YKKPHDLKKA WKVGVLTAVI KHMSPDIAKI RKLVRQSKCL QDKMTAKESA TWLAIINQEE  300
VVARELYPEL CPPLSSSSVG SGSLLINDCS EYDVEGFEKE QDVEERKPEI VMMNPATSFG  360
TGKMQQQFPV KEEVVATMGN LEYARKRKPN NDLNVMIMDR PSFTCENGQC PHSKINMGFQ  420
DRSSRDNHQM VCSYRDNRLA YGAASKFHHI GEVKPVAVSQ QSQPFPQSVQ PIDLSGYGVP  480
ENGQKMITEL MAMYDRNLQP NQSMSIDAKA AQNHQEQQLS LNRNQMFMQQ GNSGIKLDNN  540
GFQMVFDSTP FDMASFDYRD DWQAGVMEGM GKQPQDVPIW F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-851783092133Protein ETHYLENE INSENSITIVE 3
4zds_B1e-851783092133Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10001938m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528650.0AK352865.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-H19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408669.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ9SLH00.0EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLE4MWG80.0E4MWG8_EUTHA; mRNA, clone: RTFL01-14-H19
TrEMBLV4M5A10.0V4M5A1_EUTSA; Uncharacterized protein
STRINGXP_006408669.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21352879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.10.0ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  4. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  5. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  6. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  7. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  8. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]