PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002026m
Common NameEUTSA_v10002026mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 360aa    MW: 39830.3 Da    PI: 6.3684
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002026mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.9e-08122142526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G C+ Gd+C F+Hg
  Thhalv10002026m 122 ACPDFRK-GNCPKGDTCEFSHG 142
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.0E-6117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873118144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5121144IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-6122142IPR000571Zinc finger, CCCH-type
SMARTSM003560.87152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMIGETHRAY PTVHIPPWPF FDDLTAADFN GSPDGGNSMI EALAALQHYL PSNEPDPDSD  60
PDLSGPDSPI DAYSCDHFRM FEFKVRRCAR GRSHDWTECP YAHPGEKARR RDPRKYHYSG  120
TACPDFRKGN CPKGDTCEFS HGVFECWLHP ARYRTQPCKD GGHCRRRVCF FAHSPDQLRV  180
LPNQSPDRVD SFDGVSPIRR AFQFSISPAS GSPPVSPRAD SESSALLSRS LGSGSVNDVV  240
ASLRNLQLNK VKSLPSSCNN HQIGCYGSGF GSPRGSVLGP GFRSLPNTPT RLDTGYTDIW  300
DNGLEEEPAM ERVESGRELR AKMFEKLSKE NCMDRVDPDP YQGSGEAPDV GWVSELVML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002026m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531430.0AK353143.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408900.10.0zinc finger CCCH domain-containing protein 20
SwissprotO821990.0C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLV4MCX50.0V4MCX5_EUTSA; Uncharacterized protein
STRINGXP_006408900.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.10.0C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]