PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002045m
Common NameEUTSA_v10002045mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 317aa    MW: 35653.9 Da    PI: 7.686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002045mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-09129149526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+ f+r G C++Gd+C FaHg
  Thhalv10002045m 129 ACPEFRR-GSCRRGDSCEFAHG 149
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.16576113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.89E-5123153IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5129151IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7129149IPR000571Zinc finger, CCCH-type
SMARTSM0035616159182IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.615159183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMIGENSRPH PTIHIPPWDP INDPTATISS PFSSVNFHDY PHSLDSFASL YRYLPSNEFA  60
NDSDSSSGDE SLSLSFADSF ACDEFRMYEF KVRRCSRGRS HDWTECPFAH PGEKARRRDP  120
TKYHYSGTAC PEFRRGSCRR GDSCEFAHGV FECWLHPARY RTQPCKDGTS CRRRICFFAH  180
TPEQLRFLAN SAEPDLGLSS IRNHFSKSAT ATSPTSILIS PPFSPQSESP PLSPSTGELI  240
ASMRKMQLNG GCSLSSPLGL PHRSSLTQGR TWPRIREFEI WDNACEEEVP AMKLVESGKE  300
LRARMYARLS RENSLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002045m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408830.10.0zinc finger CCCH domain-containing protein 23
SwissprotO823071e-149C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLV4MCR30.0V4MCR3_EUTSA; Uncharacterized protein
STRINGXP_006408830.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-150C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]