PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002171m
Common NameEUTSA_v10002171mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 271aa    MW: 31057.8 Da    PI: 6.2903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002171mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016112133223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C  Cgk F + ++L  H+r+H
  Thhalv10002171m 112 RCCLCGKEFQTMHSLFGHMRRH 133
                      7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-64266No hitNo description
SMARTSM003550.524466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2654471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139120.00534666IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-6106133No hitNo description
SMARTSM003550.091111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806111133IPR007087Zinc finger, C2H2
PfamPF139123.3E-4112135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKRTRDDPSH FLHQSSLYDE DDDDSYSSES GEFQALSPPP QRKHFCVICD KQFSSGKAYG  60
GHVRIHSSDY NNKGKTKKMK MKKKRKIGMV KKEKEKEKEL DLVRADVEGK IRCCLCGKEF  120
QTMHSLFGHM RRHPDRSWKG IRPPPPPENF KLSFLDDGDD DDQDDDGMSR SMSMSDVTED  180
VQNAACCLMM LHCAAMRILD METPNSEVRS SSRYNGEEHG KRDGEIDDKG LVVDMKIKME  240
NNPKDDEAKG SLGFDLNQPY HEDNPYSYWN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002171m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408603.10.0uncharacterized protein LOC18025502
TrEMBLV4NTM60.0V4NTM6_EUTSA; Uncharacterized protein
STRINGXP_006408603.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-69C2H2 family protein