PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002284m
Common NameEUTSA_v10002284mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 241aa    MW: 27207.1 Da    PI: 7.8599
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002284mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1085e-342177561
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      + cprC+s+ntkfCyynnys+sqPry Ck+Crr+Wt+GG+l+++P+Gg +rk k+s
  Thhalv10002284m 21 PRVCPRCNSDNTKFCYYNNYSVSQPRYICKNCRRHWTHGGTLKDIPIGGRSRKTKRS 77
                     678***************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-221676IPR003851Zinc finger, Dof-type
PfamPF027016.8E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.8692276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDNSNIFVIG DNQVNEEKPP PRVCPRCNSD NTKFCYYNNY SVSQPRYICK NCRRHWTHGG  60
TLKDIPIGGR SRKTKRSKID QLSVSQVVSV EIQQINHNQP FLNVKETNNF VGTLGPSSST  120
VVAVGNHFDS LPEIHGDMVL PIRSVPPVNQ DYYDVGSNAL IGNPWINQSI DGNFYSYRVN  180
QEDQYKQNQS FNNNIMNMNH NAGISGSRES SDSDHMNKNN NKIENNCVSR SSDHMEKFGF  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002284m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408692.11e-178dof zinc finger protein DOF4.4
SwissprotQ9SUA97e-66DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4LHZ81e-177V4LHZ8_EUTSA; Uncharacterized protein
STRINGXP_006408692.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-58Dof-type zinc finger domain-containing protein