PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002609m
Common NameEUTSA_v10002609mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 320aa    MW: 35145.7 Da    PI: 9.558
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002609mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627e-20241275135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  Thhalv10002609m 241 CQHCGAEKTPQWRAGPSGPKTLCNACGVRYKSGRL 275
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-15233297No hitNo description
PROSITE profilePS5011412.571235271IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-17235285IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-15239273IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.46E-15240288No hitNo description
PfamPF003202.3E-17241275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440241266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGSRGRERER LKTPLFLFFN IFLSLKTKKK PSTTKRFLIL QTMEMESFMD DLLNFSVPEE  60
EEDEDEGEIV RSPRNISRRK TGLRQTDSFG LFNPDDPGVV EEDLEWISNK DAFPVIETFV  120
GVLPSEHFRL SSPEGEATEG KQLSPVSVLE TSSHNSSITT ATTSSGGSNG STVAATATAA  180
TTTTMMNCCV GLNVPGKARS KRRRTGRRDL KVLWTGNNEQ GPQKKKTPSV AAAAVSLGRK  240
CQHCGAEKTP QWRAGPSGPK TLCNACGVRY KSGRLVPEYR PANSPTFSAE LHSNSHRKIV  300
EMRKQFQSGD VVVDRKDCG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002609m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009589.10.0GATA transcription factor 1
SwissprotQ8LAU91e-122GATA1_ARATH; GATA transcription factor 1
TrEMBLV4MXL80.0V4MXL8_EUTSA; Uncharacterized protein
STRINGXP_006418795.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-120GATA transcription factor 1