PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002648m
Common NameEUTSA_v10002648mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 250aa    MW: 29195.9 Da    PI: 8.9852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002648mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.7e-181057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Thhalv10002648m 10 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding53.94.2e-1763108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r ++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Thhalv10002648m  63 RCKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 108
                      6689******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.196557IPR017930Myb domain
SuperFamilySSF466896.11E-309104IPR009057Homeodomain-like
SMARTSM007175.2E-16959IPR001005SANT/Myb domain
PfamPF002499.0E-171057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-201164IPR009057Homeodomain-like
CDDcd001675.07E-111257No hitNo description
PROSITE profilePS5129427.35558112IPR017930Myb domain
SMARTSM007171.4E-1662110IPR001005SANT/Myb domain
PfamPF002491.7E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2365111IPR009057Homeodomain-like
CDDcd001679.35E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKMMQEENRK GPWTEQEDIL LVNFVHLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRCKMTPQE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRPVS  120
PSSSFSNCCS SSMTTTNTQD VSSQPRKSSG KVSFYDTGGS NQETEDVYSM DDIWREIDHS  180
AVNIIKPVTD IYSEQSYCLS YQTLVSPSWE NSLDSIWNMD ADKSKMSSFE IDQLPFCFQH  240
SRSPWWWSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-28101124105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-28211250159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-28211250159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-28101124105C-Myb DNA-Binding Domain
1msf_C3e-28101124105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002648m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667380.0KC966738.1 Brassica napus MYB transcription factor 48 (MYB48.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009717.11e-155transcription factor MYB48
SwissprotQ9LX821e-143MYB48_ARATH; Transcription factor MYB48
TrEMBLV4L1700.0V4L170_EUTSA; Uncharacterized protein
STRINGXP_006418968.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-142myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]