PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002839m
Common NameEUTSA_v10002839mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 190aa    MW: 20189.9 Da    PI: 9.9732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002839mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015108130123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+Cg  F+    L  H+r+H
  Thhalv10002839m 108 HTCPICGVEFPMGQALGGHMRKH 130
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-75175No hitNo description
PfamPF139122.1E-105275IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1825375IPR007087Zinc finger, C2H2
SMARTSM003550.965375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-7103130No hitNo description
PfamPF139126.7E-11108131IPR007087Zinc finger, C2H2
SMARTSM003550.034108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVARSEDLAR TAQNTPANSD NLDRKVQDTA ANCLMLLSKV GDGGGGDKEK RVFRCKTCMK  60
EFSSFQALGG HRASHGKPIN TSSEEQSSSS SSLSSGSITK KAKKTTSHTC PICGVEFPMG  120
QALGGHMRKH RNEKEGGALV TRSFLPEETS TVTTLKKSSS GKRVACFDLG FDSMGSIINL  180
KLELGRTIS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002839m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418969.11e-137zinc finger protein ZAT8
SwissprotQ9LX857e-74ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLV4KHT31e-135V4KHT3_EUTSA; Uncharacterized protein
STRINGXP_006418969.11e-136(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.18e-59C2H2 family protein