PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002882m
Common NameEUTSA_v10002882mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 383aa    MW: 43816.3 Da    PI: 8.4283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002882mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-055982123
                     EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                     ++C+dCgk F+    L +H+   H
  Thhalv10002882m 59 FRCGDCGKGFRYEKCLSNHQAGmH 82
                     89*****************98666 PP
2zf-C2H2110.0013295317123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+Fs+   L  H+  H
  Thhalv10002882m 295 HQCKLCNKVFSSYQALGGHQTFH 317
                      79************999999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0685982IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0115987IPR007087Zinc finger, C2H2
PROSITE patternPS0002806182IPR007087Zinc finger, C2H2
SuperFamilySSF576677.83E-7295317No hitNo description
PROSITE profilePS5015710.45295322IPR007087Zinc finger, C2H2
PfamPF139121.3E-8295317IPR007087Zinc finger, C2H2
SMARTSM003550.095295317IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
SuperFamilySSF576677.83E-7345366No hitNo description
PfamPF139120.047349360IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEEERQNLHK PIYGVPRNHK NSQSQRDLSC YYGLRENPKK KTQESFGLES PELTKKMFFR  60
CGDCGKGFRY EKCLSNHQAG MHLSTNHRVY EASIKSLCSS FGLVRKMKRS RVIRYKKTPL  120
SCSFNTFLES PSVFAANDEE LQVAECLILL SKSSPKLVVD GLKLVSEAMG ANPETPRCCL  180
SNKKTRKAGE FKSGVSSKEQ NLMEERFSRY ERLKEPAEFE SWFSSDEQKL VKDEISSDET  240
SEEPASFLGE KSGLDQWKLK KSCDFESGFY RTELGVGDME CSDSDTGSDN RNVEHQCKLC  300
NKVFSSYQAL GGHQTFHRMS KSKNKKNRRE ESVEEPEVES VTEKKEKKRH ECSICSKEFQ  360
LGSCFRWSQE VSRQGKTIEN RA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002882m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3911435e-42AL391143.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project).
GenBankCP0026885e-42CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ0566805e-42DQ056680.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g15480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418861.10.0uncharacterized protein LOC18013921
TrEMBLV4L4S70.0V4L4S7_EUTSA; Uncharacterized protein
STRINGXP_006418861.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-111C2H2 family protein