PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10002947m
Common NameEUTSA_v10002947mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 199aa    MW: 21375.8 Da    PI: 8.6684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10002947mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + Cp+Cg  F+    L  H+++H
  Thhalv10002947m 114 HICPICGIDFPMGQALGGHMKKH 136
                      68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-55378No hitNo description
PfamPF139127.7E-95480IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4115583IPR007087Zinc finger, C2H2
SMARTSM003553.25578IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805778IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-5109136No hitNo description
PfamPF139121.2E-8114137IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512114141IPR007087Zinc finger, C2H2
SMARTSM003550.17114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVARSGNPDR TVQDTPANSE ILDDRTVEVN AANDLLQLSR VGDESGGGNR EKRVFRCKTC  60
MKDFSSSQAL GGHRSASHRK PVKKSRDEKS SSLSSESVVT TNKTKNTSKK TASHICPICG  120
IDFPMGQALG GHMKKHSNER ESGELVTRSF FPETTTSTVT TTLQEPSSGK RVLSTDLGSD  180
SVESMINLNL ELGSGKNE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10002947m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418970.11e-143zinc finger protein ZAT8
SwissprotQ9LX854e-52ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLV4MY151e-142V4MY15_EUTSA; Uncharacterized protein
STRINGXP_006418970.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.17e-46C2H2 family protein