PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10002961m

Common Name

EUTSA_v10002961mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

TCP

Protein Properties

Length: 173aa MW: 19196.2 Da PI: 8.1008

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10002961m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.3	4.2e-32	16	148	3	105
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec....eaesssss 81 +k ++++++h kvggRdRR+R++++ca ++F+L+++LGf++d++t+ WLl++a+pai ++tg+ s + ++ +++ Thhalv10002961m 16 KKAKSSKDRHLKVGGRDRRIRIPVSCASQLFQLTKKLGFKTDGETVGWLLKNAEPAISAATGDgvtttdndvinS------SgnhyTNCDNVI- 102 68899**********************************************************765444333320......111112222222. PP TCP 82 asnsssg............................kaaksaakskksqksaa 105 + +++ a+ +++ +++++ Thhalv10002961m 103 ------SnnhfpymgvnyghhdsefpvptmmdpapSSSFPANDTRRMNHRTQ 148 ......0223334456666543344444444444322222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-28	20	137	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.361	21	75	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDSRNENNDN NRCPQKKAKS SKDRHLKVGG RDRRIRIPVS CASQLFQLTK KLGFKTDGET 60 VGWLLKNAEP AISAATGDGV TTTDNDVINS SGNHYTNCDN VISNNHFPYM GVNYGHHDSE 120 FPVPTMMDPA PSSSFPANDT RRMNHRTQAQ FQLDEELAAA EKAFVQSLKQ RE*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00390	DAP	Transfer from AT3G45150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10002961m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419068.1	1e-129	transcription factor TCP16
Swissprot	Q9M1U4	6e-46	TCP16_ARATH; Transcription factor TCP16
TrEMBL	V4L1K6	1e-128	V4L1K6_EUTSA; Uncharacterized protein
STRING	XP_006419068.1	1e-128	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	1e-41	TCP domain protein 16

Link Out ? help Back to Top
Phytozome	Thhalv10002961m
Entrez Gene	18013607

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]