PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003353m
Common NameEUTSA_v10003353mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 249aa    MW: 28999 Da    PI: 6.3269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003353mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-1089137154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+r h + Er RR++ ++++  L +llP a     +K++K +i+ekAv+ I +L
  Thhalv10003353m  89 RCRLHMMKERTRREKQKQSYLALHSLLPFA-----TKNDKNSIVEKAVDQIGKL 137
                      678899************************.....9*************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-1182152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-986142No hitNo description
PROSITE profilePS5088812.86888137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-789137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-893154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-694143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDYFFLDCVC QEEEEEDKFW DLIAGDVSGN GDDGERTVNR SAFRSYVKDT EQRMMPSSST  60
VNNVKRRMVN LLRKNWEEKK NAVAPEKERC RLHMMKERTR REKQKQSYLA LHSLLPFATK  120
NDKNSIVEKA VDQIGKLERL KEDLERRMNV LEAKSAKDDD ELIGTKVRFN LQEPLSGIDS  180
MVEVLQCLKS VGTKFKTVQA NFSPHEFSAT MNIETQIRGE EVEKRVERRL QEIEWKLLFP  240
PEASFLKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003353m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403210.10.0transcription factor bHLH92
SwissprotQ9FIX51e-124BH092_ARATH; Transcription factor bHLH92
TrEMBLV4LXN50.0V4LXN5_EUTSA; Uncharacterized protein
STRINGXP_006403210.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-115bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]