PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10003393m

Common Name

EUTSA_v10003393mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 228aa MW: 25825.9 Da PI: 6.6356

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10003393m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	150	190	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Thhalv10003393m 150 RKRRERINDRLKILQRLVPNG-----TKVDISTMLEEAVHYVKFLQ 190 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.773	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-13	144	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-12	146	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-12	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.03E-12	149	194	No hit	No description
Pfam	PF00010	1.0E-8	150	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MENQDFVDGE LESLLGMFNF DQCSSDGSSF YNDQHHHEID VVSSNDLFSF ATILQGNYPA 60 VLEGSSNQTN LYVDSRQELV KPRKKQKIRP ESNWVTEPKT TWRDGQSLNS FNTSDDEKGL 120 GLDTNTSETL KVKGKPNKGI ATDPQSLYAR KRRERINDRL KILQRLVPNG TKVDISTMLE 180 EAVHYVKFLQ LQIKKSSLNS DDLWMYAPLA HNGLNIGLHH NLLSRLT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	88	RKKQKIR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10003393m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024013157.1	1e-165	transcription factor bHLH139
Swissprot	Q3E7L7	1e-122	BH139_ARATH; Transcription factor bHLH139
TrEMBL	V4L342	1e-168	V4L342_EUTSA; Uncharacterized protein
STRING	XP_006403282.1	1e-169	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4132	22	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43175.1	1e-110	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10003393m
Entrez Gene	18020592

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]