PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10003395m

Common Name

EUTSA_v10003395mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

GeBP

Protein Properties

Length: 177aa MW: 21110.3 Da PI: 6.5152

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10003395m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	42.9	1.3e-13	12	58	2	48
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk 48 +f+rlw+e+Dei++Lq +idfk ++gks+s+d d++y f k+ i+++ Thhalv10003395m 12 YFERLWTENDEITFLQRVIDFKVDQGKSYSEDKDGLYVFTKELIEIN 58 79****************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.6E-8	13	59	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MKGLQVFPRI SYFERLWTEN DEITFLQRVI DFKVDQGKSY SEDKDGLYVF TKELIEINKI 60 KYIDKDLSFM KPHDLWIVLH CQNNFGPECL CSVIHNCKKK VQDDKNDGLI HGEDLEPQKT 120 CDWFDKSFIF PSMVFYGVDE DTRKLRWRSA LVESKKKNEE KMKVLRANEI VYILEKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10003395m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	V4NF21	1e-127	V4NF21_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006403233.1	1e-128	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-19	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thhalv10003395m
Entrez Gene	18020527