PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003841m
Common NameEUTSA_v10003841mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 613aa    MW: 69968.6 Da    PI: 7.4048
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003841mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.22.8e-1594159171
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                      +W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+r+p++Ckek+e+ ++ry   +++  ++
  Thhalv10003841m  94 QWCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRTPQECKEKFEEEERRYFSSNNNTTDH 159
                      7********************998.....9*******************************9999887776 PP
2trihelix100.51.3e-31450548186
         trihelix   1 rWtkqevlaLiearr..............emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                      rW+++evlaLi++rr               + +++++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcp
  Thhalv10003841m 450 RWPRDEVLALINIRRsisnmndddhhrkdGISQSSSSSSKAVPLWEKISKKMLEVGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCP 542
                      8**************77777755555444344444445699*******************************************8.9******* PP

         trihelix  81 yfdqle 86 
                      yf+ql+
  Thhalv10003841m 543 YFHQLT 548
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1093156No hitNo description
PROSITE profilePS500905.51795146IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.7E-4445522IPR009057Homeodomain-like
PfamPF138373.0E-19449549No hitNo description
CDDcd122033.75E-23449528No hitNo description
PROSITE profilePS500906.771450521IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MFDDGEVPEQ IQRFIASPPP PPPHLLHQPG AERSLPFPIP FASYNTNQAQ LMLSLDSRKI  60
IHHHDHHHDI KDGGATSEWM GHDGDNHHHH HHRQWCSDEV LALLRFRSTV ENWFPEFTWE  120
HTSRKLAEVG FKRTPQECKE KFEEEERRYF SSNNNTTDHH IRNYNNKGNS RIFSESEEFY  180
HHGHDDDYVS SEVGDNQNKR NNSLEGKGNV EDERALDLLE VDRTDHQDQG QVDESSMGKI  240
NSVDNAGKVR NVEDDAKSSS SSSLMMIMRD NKKRKRKKEK GKFGVLKGFC EGLVRNMIAQ  300
QEEMHKKLLE DMVKKEEEKV AREEAWKNQE MERLSKEVEI REKEQAMASD RNANIIKFIS  360
KFRDHDHHDG GNSKIQSSSQ DSSSLALPRT QSSRKSQTSS LSQALTPHNQ LTSLQPIQKA  420
LEPISTKTLK TKTQNPKPPK SDEKSDLGKR WPRDEVLALI NIRRSISNMN DDDHHRKDGI  480
SQSSSSSSKA VPLWEKISKK MLEVGYKRSA KRCKEKWENI NKYFRKTKDV NKKRPLDSRT  540
CPYFHQLTAL YSQPSAGTTA TATATSPGDL ESRPVENRVG TGDPDIPAAM HGDADGAGEK  600
NNVPFSGFDL EF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276KKRKRK
2271277KKRKRKK
3273277RKRKK
4273278RKRKKE
5273279RKRKKEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003841m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395013.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLV4KM310.0V4KM31_EUTSA; Uncharacterized protein
STRINGXP_006395013.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]