PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10003860m
Common NameEUTSA_v10003860mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 602aa    MW: 65821.9 Da    PI: 4.4405
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10003860mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.97e-1132386013374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +++++cA+ ++s +   a ++L r+++ +s+ gdp++Rl +yfteAL  rl+       +++p ++ s   ++e + ++k++++++P+ kf+hl
  Thhalv10003860m 238 RAIYDCARILES-ESDVAAEALVRIRDSVSELGDPTERLGFYFTEALCDRLSP------DSVPKESPS---VEEMILSYKTLNDACPYSKFAHL 321
                      68899***8888.5677778899******************************......666666666...9********************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      taNqaIlea+e+++++Hi+Df+i qGlQWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++f+f + + + ++
  Thhalv10003860m 322 TANQAILEATENSNKIHIVDFGIVQGLQWPALLQALATRSSGKPiQVRVSGIPAPSLGesPEPSLIATGNRLRDFAKVLDLNFDFIP-ILTPIH 414
                      ****************************************98888**********99998999************************.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +l+ +++rv+p+E+laVn++lql++llde+ ++ +   + L+l +sl+P vv++ e e+++n+  F++r+ +al++ysa+f+sle +l+r+see
  Thhalv10003860m 415 SLNGSTFRVDPDEVLAVNFMLQLYKLLDETPTIVD---TALRLARSLNPIVVTLGEYEVSLNRVAFANRMRNALKFYSAVFESLEPNLGRDSEE 505
                      ***************************99999999...******************************************************** PP

             GRAS 282 rikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSa 372
                      r+ vEr+l+gr+i+ ++  e++  +rer+e++e+Wr  +e+aGF++v+ls++a++qak ll  ++ sd y++ e+   ++ l W+d pL++vS+
  Thhalv10003860m 506 RVRVERVLFGRRISGLIGPEKTGnQRERMEEKEQWRVLMESAGFESVKLSNYAVSQAKILLWYYNySDLYTIVESMPGFIsLAWNDLPLLTVSS 599
                      ******************99986699***************************************9*********999999************* PP

             GRAS 373 Wr 374
                      Wr
  Thhalv10003860m 600 WR 601
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.528210579IPR005202Transcription factor GRAS
PfamPF035142.4E-110238601IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHQDHQLFGI NPLSLNPWPN TTHQSLGFVL  60
PGSAFPDPFQ VSGGGDPGDS GFPFPTLDHH HPTSAAGGGG GFRLSDFDGG TGGEFESDEW  120
MESLIGGGDP VAADGPDCGT WQNNPDFVIY GPDPFAAAYP SRLSVPCSQP SDLNQVIATS  180
SPLPRPPVSS TLWAPSSPLS IPPPPSSSPP HQTLKGPETN DSEDGGSPGF DQEPPLLRAI  240
YDCARILESE SDVAAEALVR IRDSVSELGD PTERLGFYFT EALCDRLSPD SVPKESPSVE  300
EMILSYKTLN DACPYSKFAH LTANQAILEA TENSNKIHIV DFGIVQGLQW PALLQALATR  360
SSGKPIQVRV SGIPAPSLGE SPEPSLIATG NRLRDFAKVL DLNFDFIPIL TPIHSLNGST  420
FRVDPDEVLA VNFMLQLYKL LDETPTIVDT ALRLARSLNP IVVTLGEYEV SLNRVAFANR  480
MRNALKFYSA VFESLEPNLG RDSEERVRVE RVLFGRRISG LIGPEKTGNQ RERMEEKEQW  540
RVLMESAGFE SVKLSNYAVS QAKILLWYYN YSDLYTIVES MPGFISLAWN DLPLLTVSSW  600
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1452356013375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10003860m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526120.0AK352612.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-I07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393872.10.0scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLE4MVR50.0E4MVR5_EUTHA; mRNA, clone: RTFL01-01-I07
TrEMBLV4KUV40.0V4KUV4_EUTSA; Uncharacterized protein
STRINGXP_006393872.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]