PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004002m
Common NameEUTSA_v10004002mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CPP
Protein Properties Length: 521aa    MW: 57480.1 Da    PI: 7.4317
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004002mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.31.7e-14153191241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++++CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e
  Thhalv10004002m 153 KQRHCNCKNSRCLKLYCECFASGSYCNG-CNCLNCHNNLE 191
                      6899************************.********976 PP
2TCR53.16.3e-17236274139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      k++kgC+Ckks ClkkYCeCf+a++ Cse+C+C+dCkN 
  Thhalv10004002m 236 KHSKGCHCKKSGCLKKYCECFQANVLCSENCRCQDCKNF 274
                      589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.9E-15152192IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.923153276IPR005172CRC domain
PfamPF036384.5E-11155189IPR005172CRC domain
SMARTSM011148.9E-19236277IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.5E-13239274IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEKSDQDLGS NGNLLPRQLD FSVPAAAVVE TKIDSSSHES EKNQSHSLLD LQSSREDQRE  60
EDLPSQPQPP PYGAEEQQQR FGVKPLNPPP SFPVKSSTEV GTHDVTPPQK PPLHRFGHQL  120
QKNSLGKCRV SKQEPLTPRG HPEVESKDAT PIKQRHCNCK NSRCLKLYCE CFASGSYCNG  180
CNCLNCHNNL EKETSRQEAI TGILERNPDA FKPKIAGSPH GMGDLQDVRQ ILILGKHSKG  240
CHCKKSGCLK KYCECFQANV LCSENCRCQD CKNFDGSEER NALLHGPQVS ETYIQQTTNA  300
AVNRAIDMSG YLNPLESRKR KSKEGSHSVG ARGSSAFPHV VQNQAVNHVI RNGDTSLFSL  360
PNNKPVSGST TCTYRSSLAN TIQPHHVKEL CSLLVSKSVD VANKLSGAKC ETNKRKKYDT  420
DPSLDPAQRD ANEINDSPDS VLDAGRMDEK PLSPATRALM CDDEHVISAE KETSARVKTS  480
QEKEDADTSS EIYVEQERQI LSSFRDYLIQ LSNRGSINGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3115728514132Protein lin-54 homolog
5fd3_B2e-3115728514132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316321SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004002m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054054e-93AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026884e-93CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006995.10.0protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLV4KXJ10.0V4KXJ1_EUTSA; Uncharacterized protein
STRINGXP_006394827.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein