PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004221m
Common NameEUTSA_v10004221mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 446aa    MW: 49798.1 Da    PI: 8.9415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004221mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057294123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C++C++ F r  nL+ H r+H
  Thhalv10004221m 72 YICEICNQGFQRDQNLQMHRRRH 94
                     89********************9 PP
2zf-C2H214.50.0001150172123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k +  +s++k H++t+
  Thhalv10004221m 150 WVCERCSKGYAVQSDYKAHLKTC 172
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.29E-57194No hitNo description
PROSITE profilePS5015710.8667294IPR007087Zinc finger, C2H2
SMARTSM003550.00657294IPR015880Zinc finger, C2H2-like
PfamPF128740.0237290No hitNo description
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355160114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4141171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.29E-5145170No hitNo description
SMARTSM00355100150177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MMLDVAASNK NTNTCCVVSS SSSDPFLSSS ENGVTATNTS TQKRKRRPAG TPDPDAVVVS  60
LSPRTLLESD RYICEICNQG FQRDQNLQMH RRRHKVPWKL LKRDSNIEVK KRVYVCPEPT  120
CLHHDPCHAL GDLVGIKKHF RRKHSNHKQW VCERCSKGYA VQSDYKAHLK TCGTRGHSCD  180
CGRVFSRVES FIEHQDNCSV RKVHREPPPP PQTAVTVPAC SSRTASTAST PSSETSCGGA  240
VAVATPLPLE GRPIHMRNSS LTILTANSSN LNLELQLLPL TPNQNPNQEN QQHQVKEPSQ  300
HHHHHHHHNH DTTNLNLSIA PSSSSYHHYN NFDRIKEIMA GEQIMKIAMK EKAYAEEAKR  360
EAKRQREIAE NEFLNAKKIR QQAQAELERA KHLKELSMKK VSTTIMQVTC QTCRGQFQAV  420
AIPASDETSL VVSYMSSANT DGEGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17146200357Zinc finger protein JACKDAW
5b3h_F1e-17146200357Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004221m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3864030.0FJ386403.1 Thellungiella halophila putative inositol phosphatase gene, partial cds; cyclin-like protein, putative microtubule-associated protein, putative C2H2 zinc finger protein, brassinosteroid receptor-like protein, putative transmembrane transporter, salt overly sensitive 1-like protein, valyl-tRNA synthetase-like protein, putative glutamate decarboxylase, putative peptide transporter, putative F-box protein, putative nitrate transporter, putative NADH dehydrogenase, putative Myb DNA binding proteins, putative C2H2 zinc finger proteins, putative F-box protein, SWI/SNF helicase-like protein, defensin-like proteins, and putative PPR repeat protein genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395827.10.0protein SHOOT GRAVITROPISM 5
SwissprotF4IPE30.0IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLV4L0780.0V4L078_EUTSA; Uncharacterized protein
STRINGXP_006395827.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]