PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004351m
Common NameEUTSA_v10004351mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 399aa    MW: 44688.4 Da    PI: 5.3066
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004351mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.1e-32216270155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt+eLHe+Fv+av+qLGG+e+AtPk+il+l++ +gLt++hvkSHLQkYR+
  Thhalv10004351m 216 KQRMRWTQELHEAFVDAVNQLGGNERATPKAILKLLNKPGLTIYHVKSHLQKYRT 270
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.612213273IPR017930Myb domain
SuperFamilySSF466893.58E-17214270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-30214272IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23216270IPR006447Myb domain, plants
PfamPF002498.1E-11218269IPR001005SANT/Myb domain
PfamPF143798.7E-22304350IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MTLANDFGYS TAMSSSFSAL HATVEDRYRK LPNSFLVSSG QELMNNPVPY QVVSSGYLFS  60
SPSGFCNVSA HGRSSQTQPS DRLAMQDCPV EASLTNHHPQ QFTDPLDEFF DFSDHVPVPN  120
PQPESSGVRV VSSVEPHEKS EWQNWADQLI SADDGTEPNW SELLGDPSSH NPNSEIPTPL  180
SEVPRQEIQA YQQHQIVVSE EQISGRNSSS SAATSKQRMR WTQELHEAFV DAVNQLGGNE  240
RATPKAILKL LNKPGLTIYH VKSHLQKYRT ARYKPETSEA TGEPQDKKMT SIEDIKSLDM  300
KTSVEITQAL RLQMEVQKRL HEQLEIQRSL QLQIEKQGRY LQMMFEKQQK LQESKSSPSD  360
ASPKQCNTTS AEVEFGLETQ TGDQTESASS SRKRVRED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-25216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-25216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-25216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-25216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-25216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-25216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-25216274260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-25216274260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004351m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527940.0AK352794.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395039.10.0protein PHR1-LIKE 1 isoform X1
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLV4K4650.0V4K465_EUTSA; Uncharacterized protein
STRINGXP_006395039.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]