PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004420m
Common NameEUTSA_v10004420mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 375aa    MW: 42960.6 Da    PI: 5.1873
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004420mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-09315369146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ WT eE+e l+ +v+++ ++      Wk+I ++      ++Rt+ ++k++w++
  Thhalv10004420m 315 RLFWTSEEEEMLKVGVEKFAPEakknmPWKKILEMGEkvfhETRTPSDLKDKWRN 369
                      678*****************99**********99877*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-9309370IPR009057Homeodomain-like
PROSITE profilePS500907.735310371IPR017877Myb-like domain
SuperFamilySSF466892.03E-9313370IPR009057Homeodomain-like
SMARTSM007173.1E-4314373IPR001005SANT/Myb domain
PfamPF002498.2E-6318370IPR001005SANT/Myb domain
CDDcd116607.44E-11318371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MYYALFFHNF LSQDEANEIF GSGLSTTHCD PQCDSDVPHK KRHCLGKSET DRGGSETLNF  60
DACIVCDISD KWVSRCCGID CILSFHGECL NAEMGSSDDP ANSYCPYCWF KFLVSKQKAM  120
REKAVGAEKE VSKRMFPNMK RIHHTTFYGG ETGNQDHSID STDVVSDEEL QGEKDDCSSK  180
EEQVQVEMDS DKSSDEVEAS GGEERVDTEK FQDAEDDKDD ETAKGQDQIQ QNEKRTRRRR  240
LILKDIDSEI SSNESTSEWN GEDVTEQSTS SAQIVNSPSR KMKNQQRKHN GTTKVRVASW  300
ICRNISFFKK DQRRRLFWTS EEEEMLKVGV EKFAPEAKKN MPWKKILEMG EKVFHETRTP  360
SDLKDKWRNM NGRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004420m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937351e-61AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178771e-61AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195431e-61AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287565.21e-135uncharacterized protein LOC17882878
TrEMBLV4K4Q10.0V4K4Q1_EUTSA; Uncharacterized protein
STRINGXP_006395199.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.18e-07MYB_related family protein