PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004655m
Common NameEUTSA_v10004655mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 308aa    MW: 34760.1 Da    PI: 8.984
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004655mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.52.9e-3854113261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt GG++r vPvG+grrknk++
  Thhalv10004655m  54 PTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPVGAGRRKNKSN 113
                      67899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3740111IPR003851Zinc finger, Dof-type
PfamPF027011.8E-3156112IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.35158112IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106096IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMESKDHAIK LFGMKIPLST VFEAADEEDA ISAKKKQDET LTDQSEKDKT LRKPTKILPC  60
PRCNSMETKF CYYNNYNVNQ PRHFCKACQR YWTSGGTMRS VPVGAGRRKN KSNLSSSHYG  120
HVTTISEPNG PVLSFSLGDD HKVSNNRFGH PKLVARIDNN DHRKNDESCN NEMNGLDCFP  180
GVSWPYTWNP GFYPVYPYWN MPLLSSSPNW SSPDSTLGKH SRDEDETIKR KQRNGSVLVP  240
KTLRIDDPNG AAKSSIWTTL GIKNEVMFKG FDSKKEVKIN NEETETSLVL SANPAALSRS  300
INFHERM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. A flanking TGT sequence contributes to the specificity of binding. Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The DNA-binding ability is not modulated by 'GIGANTEA' but the stability of CDF1 is controlled by the proteasome-dependent pathway. Ubiquitinated by the SCF(ADO3) E3 ubiquitin ligase complex. Binds to the FT promoter in the morning. {ECO:0000269|PubMed:16002617, ECO:0000269|PubMed:19619493, ECO:0000269|PubMed:22628657}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004655m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation at the protein level, but not at the mRNA level. Strongly decreased expression during the dark phase. Accumulates at high levels at the beginning of the day. {ECO:0000269|PubMed:16002617}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534530.0AK353453.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394394.10.0cyclic dof factor 1
SwissprotQ8W1E31e-174CDF1_ARATH; Cyclic dof factor 1
TrEMBLE4MY560.0E4MY56_EUTHA; mRNA, clone: RTFL01-31-C08
TrEMBLV4K1B20.0V4K1B2_EUTSA; Uncharacterized protein
STRINGXP_006394394.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139791625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.11e-175cycling DOF factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Seaton DD, et al.
    Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature.
    Mol. Syst. Biol., 2015. 11(1): p. 776
    [PMID:25600997]
  4. Goralogia GS, et al.
    CYCLING DOF FACTOR 1 represses transcription through the TOPLESS co-repressor to control photoperiodic flowering in Arabidopsis.
    Plant J., 2017. 92(2): p. 244-262
    [PMID:28752516]
  5. Henriques R, et al.
    The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
    New Phytol., 2017. 216(3): p. 854-867
    [PMID:28758689]