PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004742m
Common NameEUTSA_v10004742mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 282aa    MW: 31840.6 Da    PI: 9.1027
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004742mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17104153155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Thhalv10004742m 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 153
                      78*******************......55**********************99987 PP
2AP244.34.4e-14196246155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A++  +     + k+++lg f+t+ eAa+a+++a+ k +g
  Thhalv10004742m 196 SKYRGVTLHK-CGRWEARLGQF----LNkKYVYLGLFDTEMEAARAYDKAAIKCNG 246
                      89********.7******5553....234**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-8104153IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-16104162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-17105161IPR001471AP2/ERF domain
PROSITE profilePS5103217.82105161IPR001471AP2/ERF domain
SMARTSM003804.3E-31105167IPR001471AP2/ERF domain
PfamPF008471.1E-9196246IPR001471AP2/ERF domain
CDDcd000182.33E-25196254No hitNo description
SuperFamilySSF541719.15E-18196255IPR016177DNA-binding domain
PROSITE profilePS5103215.949197254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-17197254IPR001471AP2/ERF domain
SMARTSM003808.3E-31197260IPR001471AP2/ERF domain
PRINTSPR003673.5E-6198209IPR001471AP2/ERF domain
PRINTSPR003673.5E-6236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MWNLNDSPDH HEESDVRGNR VGHVSSSTSQ STTWLLSVPP VTRNFFPGKS MEPSQVGEIS  60
GPGFPGNQCI VQSDPSGSGR PEKSEPETSQ PVKKSRRGPR SRSSQYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAHAA ARAYDRAAVK FRGVDADINF DIEDYVEDFK QMSNLTKEEF  180
MHVLRRQSPG FPRGSSKYRG VTLHKCGRWE ARLGQFLNKK YVYLGLFDTE MEAARAYDKA  240
AIKCNGKDAV TNFDPKIYEE ELSPGNLILH FQFLKIRICS N*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004742m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761450.0AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882380.0AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292060.0BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393916.20.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH951e-141TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLV4KMN40.0V4KMN4_EUTSA; Uncharacterized protein
STRINGXP_006393916.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-137target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]