PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004791m
Common NameEUTSA_v10004791mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 261aa    MW: 29327.7 Da    PI: 7.2128
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004791mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.37e-333588255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 
  Thhalv10004791m 35 PRLRWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 88
                     8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5923191IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-293188IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-233588IPR006447Myb domain, plants
SuperFamilySSF466891.22E-143587IPR009057Homeodomain-like
PfamPF002491.3E-83687IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGKCGGRNGN GNFNGVGYNG NGGGGVRPYV RSPIPRLRWT PDLHRCFVNA VDMLGGQHRA  60
TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKPEESS SSSIRRRQDT EEDYLHDNLS  120
LHTRNDCLLG FHSFPLSSHS PLRGGRRKEQ TSEFGDDDDD DFLHIMNMEK TKETTTFQSH  180
HFLEKTVKET KNWENTWQEH EEEEDLSLSL SLNNHHWRSN ASSVSETSEA VSTCSAPFVF  240
KECKPKLDLN LNLSISLIGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-193690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-193690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-193690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-193690357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004791m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3864031e-127FJ386403.1 Thellungiella halophila putative inositol phosphatase gene, partial cds; cyclin-like protein, putative microtubule-associated protein, putative C2H2 zinc finger protein, brassinosteroid receptor-like protein, putative transmembrane transporter, salt overly sensitive 1-like protein, valyl-tRNA synthetase-like protein, putative glutamate decarboxylase, putative peptide transporter, putative F-box protein, putative nitrate transporter, putative NADH dehydrogenase, putative Myb DNA binding proteins, putative C2H2 zinc finger proteins, putative F-box protein, SWI/SNF helicase-like protein, defensin-like proteins, and putative PPR repeat protein genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395816.10.0putative Myb family transcription factor At1g14600
SwissprotQ700D97e-82MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLC7SI180.0C7SI18_EUTHA; Putative Myb DNA binding protein
TrEMBLV4KSX30.0V4KSX3_EUTSA; Uncharacterized protein
STRINGXP_006395816.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-74G2-like family protein