PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10004796m

Common Name

EUTSA_v10004796mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

TCP

Protein Properties

Length: 257aa MW: 27303.5 Da PI: 10.1512

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10004796m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.5	4.7e-38	33	217	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s +s+ +s+ Thhalv10004796m 33 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGNSTTNSTsstctlss 126 79*************************************************************9999988833333333332222235666666 PP TCP 89 ............................................................kaaksaa.kskksqksaasalnlakesraka 118 a ++ +++++q+++ +al ++++++++a Thhalv10004796m 127 slldhkpllgsspfilgkrvradedtgggkdetmgsfatpagfwavparpdfgqvwsfatGAPQEMFlQQHQQQQQPGAALFVHQQQQQQA 217 7777777777777777777777777777777777777777777777777777777777763333333344444444554555555444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.2E-34	38	195	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNNTEGVMI SNGAAIQRQQ QQQQQSSDGA LVVKKPPAKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTASVSIR GNSTTNSTSS 120 TCTLSSSLLD HKPLLGSSPF ILGKRVRADE DTGGGKDETM GSFATPAGFW AVPARPDFGQ 180 VWSFATGAPQ EMFLQQHQQQ QQPGAALFVH QQQQQQAAMG EASAARVGNY LPGHLNLLAS 240 LSGGPPGSGR REDDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10004796m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189332	1e-66	AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024007014.1	0.0	transcription factor TCP7
Refseq	XP_024007015.1	0.0	transcription factor TCP7
Refseq	XP_024007016.1	0.0	transcription factor TCP7
Refseq	XP_024007017.1	0.0	transcription factor TCP7
Swissprot	Q9FMX2	1e-119	TCP7_ARATH; Transcription factor TCP7
TrEMBL	V4KPJ1	0.0	V4KPJ1_EUTSA; Uncharacterized protein
STRING	XP_006394596.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-77	TCP family protein

Link Out ? help Back to Top
Phytozome	Thhalv10004796m
Entrez Gene	18012777