PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004805m
Common NameEUTSA_v10004805mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 254aa    MW: 29266.2 Da    PI: 6.2771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004805mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.24.2e-33681831128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeelvv++L++k++  +++  +vi+++ +y ++PwdLp+k+ +e ++wyf+s++         + r+t++gyW + g d+++++
  Thhalv10004805m  68 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLALYPYDPWDLPEKALGEGRQWYFYSRKT--------QDRVTNNGYWGSMGMDETIFT 152
                      79*************************999.99***************88888999*****9974........5799***************99 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+kk L+fy g++    +t+Wvm+ey+l
  Thhalv10004805m 153 SsTRKKVGIKKYLTFYLGDS----QTNWVMQEYSL 183
                      877889**********7654....68*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4264221IPR003441NAC domain
PROSITE profilePS5100540.64468221IPR003441NAC domain
PfamPF023657.3E-2269183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MASKFHHLLL LLLYIYLSFF HTRPLVPHHI LSIYLLSPCL LFFYTHTHAT AYICTCEVVK  60
SNKLPMNLPP GFRFFPTDEE LVVHFLHRKA SLLPCHPDVI PDLALYPYDP WDLPEKALGE  120
GRQWYFYSRK TQDRVTNNGY WGSMGMDETI FTSSTRKKVG IKKYLTFYLG DSQTNWVMQE  180
YSLPDSSSSS SRSSKRSSRG STSSSHKPDY SKWVICRVYE QNCSEEEDED GTELSCLDEV  240
FLSLDDLDEV SLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-346622718174NAC domain-containing protein 19
3swm_B3e-346622718174NAC domain-containing protein 19
3swm_C3e-346622718174NAC domain-containing protein 19
3swm_D3e-346622718174NAC domain-containing protein 19
3swp_A3e-346622718174NAC domain-containing protein 19
3swp_B3e-346622718174NAC domain-containing protein 19
3swp_C3e-346622718174NAC domain-containing protein 19
3swp_D3e-346622718174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004805m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187830.0AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394143.10.0NAC domain-containing protein 104
SwissprotQ8GWK61e-113NC104_ARATH; NAC domain-containing protein 104
TrEMBLV4KJN20.0V4KJN2_EUTSA; Uncharacterized protein
STRINGXP_006394143.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-113xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]