PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10004895m

Common Name

EUTSA_v10004811mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 220aa MW: 23752.4 Da PI: 6.7677

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10004895m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.8	2.3e-11	24	70	51	97
DUF260 51 eeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + r+ + sl+yeA+ r+ +Pv+Ga+g++++++++++q+++e++l+ Thhalv10004895m 24 QPYRNLNVPSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLR 70 556888899********************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	7.9E-7	25	68	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MLKDTPPSSS LNSSVAPASC PLSQPYRNLN VPSLLYEACG RTVNPVNGAI GMLWTGNWNI 60 CQAAVETVLR GGSLRPIPEL LTHGGGFAGF PSATSEEASE ICTEMLNLQQ NNSSDRNVYH 120 HSRFSSSRSR STMDSSPTKR KRLASEQQLS SELDLSLIPN FPIKTTPSST RRRVESPSMN 180 SEESVTTTTT TSFWDNTATA TDDLYGKGGE TSKLLNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10004895m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393945.1	1e-134	LOB domain-containing protein 37
Swissprot	Q9FN11	9e-92	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	V4K073	1e-159	V4K073_EUTSA; Uncharacterized protein
STRING	XP_006393945.1	1e-134	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	5e-80	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Thhalv10004895m
Entrez Gene	18011981

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]