PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10005000m

Common Name

EUTSA_v10005000mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bZIP

Protein Properties

Length: 180aa MW: 20865.3 Da PI: 6.5326

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005000m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.7e-13	83	141	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+ +NRe+ArrsR RK+ ++eL v L +eN L+++l++ +++ +++ +e+ Thhalv10005000m 83 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQDSVLKEN 141 79************************************************999888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.8E-14	79	143	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.795	81	144	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.1E-10	81	133	No hit	No description
SuperFamily	SSF57959	5.42E-12	83	132	No hit	No description
Pfam	PF00170	4.7E-11	83	141	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.28E-17	84	132	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MIPAEITGYF QYLSPENLAT IPAEFNIINM PSSPTSSSSL NYLNDLINNN NYSSSSTCQD 60 LMMSNNSASD EDHNQNIIIL DERKQRRMLS NRESARRSRM RKQRHLDELW SQVIRLRNEN 120 NCLIDKLNRV SETQDSVLKE NSKLKEEAFD LRRLVCELKS NKKNINNSNN SFLREFEDV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	102	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00262	DAP	Transfer from AT2G04038	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005000m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493545	1e-123	AB493545.1 Arabidopsis thaliana At2g04038 gene for hypothetical protein, partial cds, clone: RAAt2g04038.
GenBank	AC007178	1e-123	AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.
GenBank	CP002685	1e-123	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395651.1	1e-126	basic leucine zipper 43
Swissprot	Q9FMC2	4e-29	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	V4KSF3	1e-125	V4KSF3_EUTSA; Uncharacterized protein
STRING	XP_006395651.1	1e-125	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04038.1	2e-69	basic leucine-zipper 48

Link Out ? help Back to Top
Phytozome	Thhalv10005000m
Entrez Gene	18012217

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]